Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3433 ATGGAATTAGGAGGAAGTTCCACAGATGAAACTGTCACAAGCAATGACTCTCTTTCGGCGAACTTATCTACACCGCCGCCAACGCTGAACTCACTAAGCCGCGTTGGCAGTGCTGCTAGCTCCGTCGTGGATCCAGAAATCTACGGCGTCTCCGGTGAGGCGGAGTCTCGTAAACTTCCATCGTCGAAATACAAAGGCGTGGTGCCACAGCCTAACGGACGTTGGGGAGCACAGATTTACGAGAAACACCAGCGTGTGTGGCTTGGTACGTTCAATGAAGAAGACGAAGCAGCCAGAGCCTATGACATAGCCGCCTTGAGATTCCGTGGAAAAGATGCTGTTACAAATTCTAAAAGTCTCACTGGCGTTGGTAACGACGCCGACGAAGGTGAAACTGAGTTTCTGAATTCACATTCTAAGTCGGAGATTGTTGATATGCTTCGGAAACACACCTACGATGACGAGCTTAAGCAAAGCATGCGTGACATGAGCGGTGGAAGACAGCGGCGTAACGGAGAATTGAATGGTGCGGTTTCACGTGGCGCGTGTGATGCTAAAGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCGAGTGACGTGGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCATGCGGAGAAGCATTTTCCGTTGAATGCAGTTGCTGTTGCCGTCGCATGCGACGGAGTCTCGACGGCTGCTGCGGCGGCGAAGGGTTTGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGATTTCGTTATTCTTATTGGAATAGTAGCCAGAGTTATGTTTTGACCAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGGTCGACTGGACCGGACCGGCAGCTTTACATTGACTGTAAAGCAAGGAGCATTGGTGTTGTCGGTGGTCAGGTTGATAATAATAATAATAATACTGGTGGTTTGTTTATTACGGTTCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCAGAAGGAGTTGGTGGTAGTTGCAATGGAAAGAGGAAAGAAATGGAATTGTTCGCCTTAGAATGCAGCAAAAAGCCAAAGATAATTGGAGCCTTATAA 1155 0.4866 MELGGSSTDETVTSNDSLSANLSTPPPTLNSLSRVGSAASSVVDPEIYGVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKSLTGVGNDADEGETEFLNSHSKSEIVDMLRKHTYDDELKQSMRDMSGGRQRRNGELNGAVSRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVACDGVSTAAAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSIGVVGGQVDNNNNNTGGLFITVRPVVEPVQMVRLFGVNLLKLPGSEGVGGSCNGKRKEMELFALECSKKPKIIGAL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3433 384 SUPERFAMILY DNA-binding domain 62 116 IPR016177 GO:0003677
Mtr1g3433 384 CDD B3_DNA 191 293 IPR003340 GO:0003677
Mtr1g3433 384 SUPERFAMILY DNA-binding pseudobarrel domain 190 304 IPR015300 -
Mtr1g3433 384 CDD AP2 62 116 IPR001471 GO:0003700|GO:0006355
Mtr1g3433 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 384 IPR044800 GO:0003700
Mtr1g3433 384 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Mtr1g3433 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 384 - -
Mtr1g3433 384 ProSiteProfiles B3 DNA-binding domain profile. 192 308 IPR003340 GO:0003677
Mtr1g3433 384 SMART rav1_2 63 124 IPR001471 GO:0003700|GO:0006355
Mtr1g3433 384 MobiDBLite consensus disorder prediction 1 36 - -
Mtr1g3433 384 Pfam B3 DNA binding domain 192 298 IPR003340 GO:0003677
Mtr1g3433 384 Gene3D AP2/ERF domain 62 118 IPR036955 GO:0003700|GO:0006355
Mtr1g3433 384 Gene3D - 181 312 IPR015300 -
Mtr1g3433 384 ProSiteProfiles AP2/ERF domain profile. 63 118 IPR001471 GO:0003700|GO:0006355
Mtr1g3433 384 SMART B3_2 192 307 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3433 Mtr-Chr1 45608333 45610013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3433 6 384 B3 DNA Binding Superfamily AT1G25560 58.081 6.30e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Mtr1g3433 B3 1.4e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3433 1 45608333 45610013 Mtr1g3433 1 45608333 45610013 ECH