Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3432 ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTGCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCACACCCCCTCATCCCACTATTAGTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTCCACCATCACCATACTTGTGCTGTAAATGTAGCACTTAATGCCCTAATTAATCCAACTTTCACTTCAAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTTTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGTTACTGTTGTGCTGAGGGTTGCAGAAACAATATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAGAGAAAGCACGGAGGGAAATCATTCGAGTGCAGAAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCGCTAAAAGACCATGTTCGTGCGTTTGGTAATGGCCATGCTCCTCACACATTGGAATCTTTGAGTTTTGATGGACATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAAGTGGAAGTGAAGATGATGACAATGACAGTGAAGTTGTTTTTAGTTTGAATTAA 885 0.4158 MQTHHQYYSFSCESASCSSSLDDEDSIFLSLAPPGHQIPPKLTPPHPTISTTIPPLHQIPISTTTSLHHHHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDGHKVNENYMEEEESGSEDDDNDSEVVFSLN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3432 294 PANTHER ZINC FINGER PROTEIN WIP6 1 286 - -
Mtr1g3432 294 ProSiteProfiles Post-SET domain profile. 160 176 IPR003616 -
Mtr1g3432 294 MobiDBLite consensus disorder prediction 273 294 - -
Mtr1g3432 294 PANTHER ZINC FINGER PROTEIN WIP2 1 286 IPR043584 GO:0003700|GO:0010468
Mtr1g3432 294 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Mtr1g3432 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Mtr1g3432 294 SUPERFAMILY beta-beta-alpha zinc fingers 99 136 IPR036236 -
Mtr1g3432 294 SMART c2h2final6 202 222 IPR013087 -
Mtr1g3432 294 SMART c2h2final6 165 197 IPR013087 -
Mtr1g3432 294 SMART c2h2final6 115 137 IPR013087 -
Mtr1g3432 294 Gene3D Classic Zinc Finger 114 137 - -
Mtr1g3432 294 SUPERFAMILY beta-beta-alpha zinc fingers 186 222 IPR036236 -
Mtr1g3432 294 Pfam Zinc finger, C2H2 type 115 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3432 Mtr-Chr1 45595856 45597323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3432 23 258 C2H2 Transcription Factor Family AT1G13290 66.946 2.96e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g3432 zf-C2H2_6 0.00069 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3432 1 45595856 45597323 Mtr1g3432 1 45595856 45597323 ECH