Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3379 ATGGCACTCTCGCGCCTTCGTCACCCTCTCATCTCTCATTCCATTCGTATACTCTCATCTTCCACCAGATCCATTTCGAGAACTCCTAATTCAAGGATTTATTCCGTTGGTAATGGGAATCTAAGGCCTGCATCTTGGTCTGGGCTTACTGGAGTTTGTAATAGACCTTTAAAGTCAAGGTGGATTGATGTCAAATTCTTCTCGTCGTCAGATTTTCCACATGAAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAGGAAAAAAGAAGGGGATAAGATAGCAGTGGGTGATATACTATGTGAAATTGAAACTGACAAAGCTACACTTGAATTTGAAAGTCTTGAAGAAGGATTTCTGGCTAAGATATTGGTACCTGATGGTTCAAAGGATGTGCCAGTTGGACAACCGATTGCAATAACAGTTGAGGAAGAAAGCGGCATTCAAAATGTTCCTGCTTCTGTGGGGGGTGAGAGCGGGGTTGAAGAGAAGAAACCAGCACACCAGGATGCCGCAGATGAGGAGAGAAAACCAGAAACAACTTCTACGATTGATACATCAAATCTTCCACCTCACATTATTCTTGGAATGCCTGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAATGGAATAAAAAAGAAGGAGACAAGATTGAAGTGGGTGACATATTATGCGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAAAGTCTTGAAGAGGGGTACCTAGCTAAGATAGTTGCACCAGAAGGTTCAAAAGAAGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCAAGTGATATTGAAGCTGTTAAGAATTCTATTAGCAGCAGCTCAGTAAACCAAAAGGAGAAGACCACCCAACATGACACTAAAAGTGAAGTCAAAACAAAGAAAACAAATACAGCACGAATCAGTCCAGCTGCAAAGTTGCTAATTTTGGAATATGGATTGGACGCATCAACATTGAATGCAACTGGTCCTCACGGCACCCTACTGAAAGGTGATGTTCTTTCTGCAATTAAATCAGGAAAATTGTCTTCAAAACCTGCTTCATCTAAAGAAAAGGCATCATCATCTCAAAGTCATCAAGTTGCGGCTTCACAAGAATCAAAGTCTGGCTTAAAGCAGTCTGATACTTATGAAGATTTTCCGAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCTAAACAAAATACACCACACTTATATTTATCATCAGATGTTACACTGGATCCTCTTCTTTCCCTTAGAAAGGATCTTAAAGAGCAGTATGACGTCAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCAGCTGCTCTCAGAAATGTTCCAGAAGCAAACGCATACTGGAATGATGAGAAAGGGGAAGTCATCTTATGCGATTCCGTTGACATATCAATAGCAGTTGCCACCGAGAAGGGCTTGATGACTCCAATATTAAAAAATGCAGATCACAAGACAATATCTGCCATCTCCTCAGAGGTCAAGGAGCTAGCTGCAAAAGCTCGTGAAGGGAAATTGAAGCCGCAAGAATTTCAAGGGGGGACTTTTAGCATTTCAAACTTAGGAATGTATCCTGTGGATAAATTCTGTGCTATTATAAATCCCCCACAGGCTTGCATTCTTGCTGTAGGGAGAGGCAACAAAGTAGTTGAAGCAGTAATTGGAGCTGATGGAATTGAGAAGCCATCTGTTGCCACTAAGTTGAACTTAACATTGTCTGCCGATCATCGCGTCTTTGATGGCAAAGTTGGAGGTGCATTTCTCTCTGCTCTTCAGTCAAACTTCAGAGATATAAGACGGCTTCTTTTATAA 1878 0.4111 MALSRLRHPLISHSIRILSSSTRSISRTPNSRIYSVGNGNLRPASWSGLTGVCNRPLKSRWIDVKFFSSSDFPHEVLGMPALSPTMTQGNIAKWRKKEGDKIAVGDILCEIETDKATLEFESLEEGFLAKILVPDGSKDVPVGQPIAITVEEESGIQNVPASVGGESGVEEKKPAHQDAADEERKPETTSTIDTSNLPPHIILGMPALSPTMNQGNIAKWNKKEGDKIEVGDILCEIETDKATLEFESLEEGYLAKIVAPEGSKEVAVGQPIAITVEDASDIEAVKNSISSSSVNQKEKTTQHDTKSEVKTKKTNTARISPAAKLLILEYGLDASTLNATGPHGTLLKGDVLSAIKSGKLSSKPASSKEKASSSQSHQVAASQESKSGLKQSDTYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVTLDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNDEKGEVILCDSVDISIAVATEKGLMTPILKNADHKTISAISSEVKELAAKAREGKLKPQEFQGGTFSISNLGMYPVDKFCAIINPPQACILAVGRGNKVVEAVIGADGIEKPSVATKLNLTLSADHRVFDGKVGGAFLSALQSNFRDIRRLLL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3379 625 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 225 254 IPR003016 -
Mtr1g3379 625 SUPERFAMILY Single hybrid motif 200 291 IPR011053 -
Mtr1g3379 625 MobiDBLite consensus disorder prediction 159 199 - -
Mtr1g3379 625 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 71 189 - -
Mtr1g3379 625 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 197 620 - -
Mtr1g3379 625 SUPERFAMILY CoA-dependent acyltransferases 391 625 - -
Mtr1g3379 625 CDD lipoyl_domain 79 148 - -
Mtr1g3379 625 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 203 616 IPR006257 GO:0004742|GO:0006090|GO:0045254
Mtr1g3379 625 MobiDBLite consensus disorder prediction 169 189 - -
Mtr1g3379 625 CDD lipoyl_domain 205 274 - -
Mtr1g3379 625 Gene3D - 318 359 IPR036625 GO:0016746
Mtr1g3379 625 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 99 128 IPR003016 -
Mtr1g3379 625 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 197 620 IPR045257 GO:0006086|GO:0045254
Mtr1g3379 625 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 71 189 IPR045257 GO:0006086|GO:0045254
Mtr1g3379 625 Gene3D - 198 301 - -
Mtr1g3379 625 Gene3D - 69 173 - -
Mtr1g3379 625 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 318 355 IPR004167 GO:0016746
Mtr1g3379 625 ProSiteProfiles Biotinyl/lipoyl domain profile. 74 150 IPR000089 -
Mtr1g3379 625 MobiDBLite consensus disorder prediction 299 313 - -
Mtr1g3379 625 Pfam Biotin-requiring enzyme 77 148 IPR000089 -
Mtr1g3379 625 Pfam Biotin-requiring enzyme 204 274 IPR000089 -
Mtr1g3379 625 ProSiteProfiles Biotinyl/lipoyl domain profile. 200 276 IPR000089 -
Mtr1g3379 625 Gene3D - 379 625 IPR023213 -
Mtr1g3379 625 MobiDBLite consensus disorder prediction 287 315 - -
Mtr1g3379 625 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 394 624 IPR001078 GO:0016746
Mtr1g3379 625 SUPERFAMILY Single hybrid motif 77 163 IPR011053 -
Mtr1g3379 625 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 312 357 IPR036625 GO:0016746
Mtr1g3379 625 Pfam e3 binding domain 318 352 IPR004167 GO:0016746
Mtr1g3379 625 MobiDBLite consensus disorder prediction 361 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3379 Mtr-Chr1 44998248 45009347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3379 194 625 Acyl Lipid Metabolism Gene Families AT3G13930 42.763 2.38e-110 340
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3379 1 44998248 45009347 Mtr1g3379 1 44998248 45009347 ECH