Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3186 ATGGTGTCGCTCAAACTTCAGAAGCGGCTCGCCGCCAGCGTACTCAAGTGTGGTCGTGGCAAGGTCTGGCTTGACCCTAATGAGTGCAATGAAATCTCCATGGCTAATTCACGCCAAAACATCAGGAAGTTGGTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAGATTCACTCCCGCTCCCGTGCTAGGCGCATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATGGAAAGAGAAAGGGTACAAGAGAGGCTAGGCTCCCCACCAAAATCCTTTGGATGAGGAGAATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGGCAAAGAAGATTGACAAACATATGTATCATGATATGTACATGAAGGTGAAGGGAAATGTCTTCAAGAACAAGAGAGTCCTTATGGAGAGTATTCACAAATCCAAGGCTGAGAAGGCTAGGGAGAAGACATTATCTGATCAGTTTGAGGCCAAGAGGGCGAAGAATAAGGCTAGCAGGGAAAGGAAGCATGCCCGGAGAGAAGAGCGCTTTGCTCAAGGTCCAGGAGAGAAGGTTCCTGCAGCTGCAGCACCAGCCGCATCAGCTGCAACAGCAACCCAGGCCCAACCATCAAAGAAATCCAAGAAGTAA 642 0.4953 MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGEKVPAAAAPAASAATATQAQPSKKSKK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3186 213 Gene3D - 57 188 - -
Mtr1g3186 213 PANTHER 60S RIBOSOMAL PROTEIN L19 1 213 IPR039547 GO:0003723|GO:0003735|GO:0022625
Mtr1g3186 213 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr1g3186 213 MobiDBLite consensus disorder prediction 199 213 - -
Mtr1g3186 213 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Mtr1g3186 213 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Mtr1g3186 213 MobiDBLite consensus disorder prediction 57 79 - -
Mtr1g3186 213 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Mtr1g3186 213 MobiDBLite consensus disorder prediction 144 213 - -
Mtr1g3186 213 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr1g3186 213 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Mtr1g3186 213 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mtr1g3186 213 PANTHER RIBOSOMAL PROTEIN L19 1 213 - -
Mtr1g3186 213 MobiDBLite consensus disorder prediction 144 184 - -
Mtr1g3186 213 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3186 Mtr-Chr1 43161452 43163671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3186 1 201 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.222 1.07e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3186 K02885 - gmx:100499883 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3186 1 43161452 43163671 Mtr1g3186 1 43161452 43163671 ECH