Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2742 ATGGACACAACTCAGTGGCCTCAGGAGATTATGGTGAAGCCATTAATAGAAGGTAATATTATAGCAACAAATACATGTGAAAAACCTATGTTGGAGAGGAAGCCAAAACAACAGAAACAAGAAGCAATTAACTGTCCAAGGTGTAATTCAATTAACACAAAATTTTGTTACTACAACAACTATAGTTTGACACAACCAAGATATTTCTGCAAAACATGTAGAAGGTATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCAAGAAAAAACAACAAAAATAGATCTTCTTCCAGTTTTGTTTCAAATCCATCACCTTCAACAAAAAACATACTTGATGAAAACCAAAACCATAAGATCCATCATGAAGAAGGACAAGATCTAAATTTAGGGTTTCCTCACATCTCTGATTTGGTTCAGCAAAATAACAACACTTCTTCTTCCACTTCTTCAGCATTGGAGCTTCTTACTTCAGGGTTTAGTTCAAGTTCAAGGGGTTTGCATTCTTTCATGCCTGCTCAAGTTCAAGGTTGTGGATTTCCTTTGCAAGATTTTAAGCAAGTACCAATGAATTTCTGTTTAGATGGGATTGGTGGAAGTGGTTATGCAAGTCTTGATCATGGTGTTCAAGAGACAATTAGTGAAGGGAGGGTTTTGTTTCCTTTTGAGGATTTGAAACATGTTTCTAGTACAAATAACCCAACAATATTGGATTTGGATCAGAATAATAATAAGGAGGATCAACAAGGATATTCAACAGGGATTTGGACTGGAATGTTGGGAGGAGAAGGAGGAGGATCATGGTTTTGGGGTGTGTCAGTTGCTGAAAAATACATGTCTGCATTAAAGCAAGTATCACCTTGA 876 0.3687 MDTTQWPQEIMVKPLIEGNIIATNTCEKPMLERKPKQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNRSSSSFVSNPSPSTKNILDENQNHKIHHEEGQDLNLGFPHISDLVQQNNNTSSSTSSALELLTSGFSSSSRGLHSFMPAQVQGCGFPLQDFKQVPMNFCLDGIGGSGYASLDHGVQETISEGRVLFPFEDLKHVSSTNNPTILDLDQNNNKEDQQGYSTGIWTGMLGGEGGGSWFWGVSVAEKYMSALKQVSP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2742 291 MobiDBLite consensus disorder prediction 84 116 - -
Mtr1g2742 291 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Mtr1g2742 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 3 265 - -
Mtr1g2742 291 MobiDBLite consensus disorder prediction 89 116 - -
Mtr1g2742 291 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Mtr1g2742 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 265 IPR045174 GO:0003700|GO:0006355
Mtr1g2742 291 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2742 Mtr-Chr1 38526254 38529123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2742 1 272 C2C2-Dof Transcription Factor Family AT4G24060 39.193 1.17e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr1g2742 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2742 - - mtr:MTR_1g077600 518.85