Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1942 ATGGAGAGTGAGTGGAAAGCTAATCAGATATCACCAAATTGTCCAAGATGTGGTTCTTCAAACACAAAATTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGATATTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACCTTAGTAAGACATCGATCCTTTGACTCTCTCACTTTCAAAAACTCACCTAATTCTCTCACTACTTTAGATAACAATCATTCTTATGATCCTATTTTGAGGACTAATATTTCATCTTCTAGTTCCTCATTGGTGAATGATAGACCCAATATTGATCTTGCATTGGTTTATGCAAATTTCCTCAATCAAAAACCTGATTCTCATATTCCTGATCAAATGCGAAAAACAAATTTCGATCCTTGTCTAGAAAATTCAAGGCTATCAAATGTTGAAGGCGGTACGAGTAGTTTAAATTTGTCTGAATTAGAACTTGGTTTCAAAGGGTGTTTGAATCTTAATCCAGAACAATTACCATCCACAACAGTAACAAATTTTAGTGAGTTCAATTCTATGCAAACCCTTCAAAAAGATAGAATTGATCATTGTAGTAATATTCATGATGATGGTTTGAATGTGAATTTTGAGCTACCACCTTTACCAGGTGAAGAGGATTCACCATCACATGATCATGTATTGTGGTCCAATTCTGAAATGATGATAAACCTTCCATTTCAAGTTACTCAACCTCCACCACCATTTCTTGGTCCTGATCAAATTCATGATGCAGACTTGTTAATTGGTAATTGGAGCCCTTTTGATTTTCCAAGGGATGCTTAA 867 0.3576 MESEWKANQISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLVRHRSFDSLTFKNSPNSLTTLDNNHSYDPILRTNISSSSSSLVNDRPNIDLALVYANFLNQKPDSHIPDQMRKTNFDPCLENSRLSNVEGGTSSLNLSELELGFKGCLNLNPEQLPSTTVTNFSEFNSMQTLQKDRIDHCSNIHDDGLNVNFELPPLPGEEDSPSHDHVLWSNSEMMINLPFQVTQPPPPFLGPDQIHDADLLIGNWSPFDFPRDA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1942 288 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Mtr1g1942 288 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
Mtr1g1942 288 Pfam Dof domain, zinc finger 13 66 IPR003851 GO:0003677|GO:0006355
Mtr1g1942 288 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 287 - -
Mtr1g1942 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 287 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1942 Mtr-Chr1 28782753 28784246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1942 5 288 C2C2-Dof Transcription Factor Family AT3G52440 35.880 2.31e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr1g1942 zf-Dof 6.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1942 - - aprc:113871380 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1942 1 28782753 28784246 Mtr1g1942 1 28782753 28784246 ECH