Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1906 ATGCAAGACCGAACAACATTTCAACCCATGAAACAAAATTTTCCAGAACAAGAACATTGCAAAAGATATTGGGCAAAAGGTGGTGCTTTAAGGAACATACCAGTTGGTGTTGGAACAAGAAAAGTTACAAAACGTTCATCAAGTTCTAAACGTTCAACAACACCATCTTCATCTTCTCCATCAACATCATCCACTTCTTCAGCAGCAAAAGTTTCAGCTTCAGTTCCAGAAACTGACCCGACCCAGATTCATGTTGACCCGATTGTGAGAAATTTTGGTGAAGGTCTTCTTCTTACGCTTCTTAGCTCCACCACGAAGACGAAGAGTGTAACGCCCTAG 339 0.413 MQDRTTFQPMKQNFPEQEHCKRYWAKGGALRNIPVGVGTRKVTKRSSSSKRSTTPSSSSPSTSSTSSAAKVSASVPETDPTQIHVDPIVRNFGEGLLLTLLSSTTKTKSVTP* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1906 112 MobiDBLite consensus disorder prediction 35 85 - -
Mtr1g1906 112 MobiDBLite consensus disorder prediction 48 79 - -
Mtr1g1906 112 Pfam Dof domain, zinc finger 19 44 IPR003851 GO:0003677|GO:0006355
Mtr1g1906 112 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 104 IPR045174 GO:0003700|GO:0006355
Mtr1g1906 112 PANTHER DOF ZINC FINGER PROTEIN DOF1.7 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1906 Mtr-Chr1 28275224 28275562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1906 18 83 C2C2-Dof Transcription Factor Family AT1G51700 44.286 1.68e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr1g1906 zf-Dof 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1906 - - mtr:MTR_1g055265 148.288