Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1169 ATGAGCAATGAATCTGAATCCGAAGTTTGTGATAATCCAATTCCACCTCCAAACATTGGTAAGAGGCAGTGTGAGGATGAAGATGAGAAGGAAGTGATTACAAAGAAGCAGAAGATAGAGGAGGTTGTTGAAATGAAAGAGATTAAGGAAGAAACTGATTCAGATTATTTGAAAATTGGTGAGGATGAAGATCGGAAGGAAGTGATTACGATGAAAGAGATTAAGGAGGAAATTATTTCAGATGATTCTGAACATGATAAGAAACTTGAAGCTAAAAACGATTCTGCTACTGGTTGTGGTCCTTCAGAATCATTGGATGATGTTATCTCAGATTCTGATTCTCACAGAAGCTCTGGTGAGGATAATCCCGATGATTCGGAGAGTCCAGAGTATATTGGGGAAGAAGTAGAGGAAAAAGTCTCCGAAGCGCATCAGGAAAGGCACGAAACCCCAGTCACTATAAACGAAAAAGATGCTCCATCGAAGACAATATGTGTTAGAAACTTGTCATATAGTGTGGAACGGACTGATATGGAAGACATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGTTTCAACACAGATCGCGAAGGGAGGTTTAGAGGCTTTGGATATGTTGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCCTTAAATTGGATAGTACAGAATTATTGAACCGTCGCATGAGAGTTGATATAGCTATAGAAAAGAGCGGCTATCCCCCCTGTAGAAGCAACTTGAGCAGCTCAGTCCATACGGGTGGAAATCTTCAGTCTCACCCTCACACTGTAAAGGGTGTTGTTGATGCATCTATTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGTTGCATCAAAGACCATATATGTCAGAAATTTGTCATACACTGTGGAACGATCTGATATGGAAAATATTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTCCATACAGATCGCGAAGGGAAATTTAAAGGCCATGCACATGTTCAGTTTGCAACAGCAGATGCAGCACAAAAGGCTCTTGTGTTCAATAAGAAAGTATTTTACAATCGTCTTATGTTCGTTGGTATCGCTTTTGAAAGGGGTATATATTCCCCAAATAGAAGCAATTCGACCTGGAGCAGCTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTATACCTGTGAAGTGTTTTGATACATCCCTTGCCGAAGACAAGTTGGCTTGTGCAAAGGATGTTAAGGATATACAGATGTCTGATGCTGATGCTGATGCTGCCTCTGCTGAGAATAAACTTCCTGAAACCCCAGCTACCCAAAAAGAGAAAAATGATGCATCAAAAACAGTATGCGTTAGAAATTTGTCATTCGATGTGCAACGGGCTGAAATTGAAAGTATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGTGTGCATGTGGATGTTGAGTTTGCAACCACAGAAGCAGCAGAAAAGGCTCTTCAGTTGGATCACACAAAATTTGCGAACCGTCCCATCAAAGTTGGTATAGCTCCAGGAGAGGGTGAATGTTTCCCCAATAGAAGCTTGAGCATCTCATTCCAGAAGGGTGAAAGCTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATCTGTTGCAGAAGAAAAGATAAAAGCTAGCCTGAAAGCACATTTCAGTCCTTGCGGAGAGATTACAAGGATCTCGTTGCCAAGATATCATGATTCTGGTAATATTAAGGGGTTTGCTCATCTGGACTTCAAGGATATTGATGGCTATAAGAAAGCACTACAACTTGATCAAACTGCCATTGGAGATTATTGGTTGTCAGTTGTAAAAGCAAAGCCGAGACGTGATTATCAGGGTATAGGTGGTGGCAGAGGTGGCTATCACGGTGGTGGATGGGATGGAGGAGACCATGGTGGGAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGGTAGGCACTGGACCGCCAATACTGAGCACTGGTGA 2007 0.4145 MSNESESEVCDNPIPPPNIGKRQCEDEDEKEVITKKQKIEEVVEMKEIKEETDSDYLKIGEDEDRKEVITMKEIKEEIISDDSEHDKKLEAKNDSATGCGPSESLDDVISDSDSHRSSGEDNPDDSESPEYIGEEVEEKVSEAHQERHETPVTINEKDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAKKALKLDSTELLNRRMRVDIAIEKSGYPPCRSNLSSSVHTGGNLQSHPHTVKGVVDASIVENKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDREGKFKGHAHVQFATADAAQKALVFNKKVFYNRLMFVGIAFERGIYSPNRSNSTWSSSFHKDERFQSQTIPVKCFDTSLAEDKLACAKDVKDIQMSDADADAASAENKLPETPATQKEKNDASKTVCVRNLSFDVQRAEIESIFKDCGEVVDVRVHVDVEFATTEAAEKALQLDHTKFANRPIKVGIAPGEGECFPNRSLSISFQKGESFQPLTVFVIGFDTSVAEEKIKASLKAHFSPCGEITRISLPRYHDSGNIKGFAHLDFKDIDGYKKALQLDQTAIGDYWLSVVKAKPRRDYQGIGGGRGGYHGGGWDGGDHGGRAGWGRSHGAGRHWTANTEHW* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1169 668 MobiDBLite consensus disorder prediction 1 35 - -
Mtr1g1169 668 MobiDBLite consensus disorder prediction 21 35 - -
Mtr1g1169 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 621 IPR000504 GO:0003723
Mtr1g1169 668 SUPERFAMILY RNA-binding domain, RBD 282 380 IPR035979 GO:0003676
Mtr1g1169 668 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 542 654 - -
Mtr1g1169 668 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 428 525 - -
Mtr1g1169 668 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 94 385 - -
Mtr1g1169 668 MobiDBLite consensus disorder prediction 133 155 - -
Mtr1g1169 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 369 IPR000504 GO:0003723
Mtr1g1169 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 231 IPR000504 GO:0003723
Mtr1g1169 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 557 611 IPR000504 GO:0003723
Mtr1g1169 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 453 511 IPR000504 GO:0003723
Mtr1g1169 668 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 360 IPR000504 GO:0003723
Mtr1g1169 668 Gene3D - 407 520 IPR012677 -
Mtr1g1169 668 Gene3D - 260 377 IPR012677 -
Mtr1g1169 668 MobiDBLite consensus disorder prediction 428 448 - -
Mtr1g1169 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 451 517 IPR000504 GO:0003723
Mtr1g1169 668 Gene3D - 529 658 IPR012677 -
Mtr1g1169 668 Gene3D - 131 259 IPR012677 -
Mtr1g1169 668 MobiDBLite consensus disorder prediction 108 123 - -
Mtr1g1169 668 MobiDBLite consensus disorder prediction 48 156 - -
Mtr1g1169 668 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 542 654 - -
Mtr1g1169 668 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 94 385 - -
Mtr1g1169 668 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 428 525 - -
Mtr1g1169 668 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Mtr1g1169 668 MobiDBLite consensus disorder prediction 48 93 - -
Mtr1g1169 668 SUPERFAMILY RNA-binding domain, RBD 441 527 IPR035979 GO:0003676
Mtr1g1169 668 SMART rrm1_1 163 234 IPR000504 GO:0003723
Mtr1g1169 668 SMART rrm1_1 294 365 IPR000504 GO:0003723
Mtr1g1169 668 SMART rrm1_1 541 617 IPR000504 GO:0003723
Mtr1g1169 668 SMART rrm1_1 452 513 IPR000504 GO:0003723
Mtr1g1169 668 SUPERFAMILY RNA-binding domain, RBD 153 253 IPR035979 GO:0003676
Mtr1g1169 668 SUPERFAMILY RNA-binding domain, RBD 535 649 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1169 Mtr-Chr1 13397600 13410543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1169 163 515 Eukaryotic Initiation Factors Gene Family AT4G34110 21.782 6.14e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1169 1 13397600 13410543 Mtr1g1169 1 13397600 13410543 ECH