Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0749 ATGACTCAAGACGAAGAGATGAAAGATCTCCCAACACCTTCTCAATCTATTCCTTCCACATTGCAACATTTGAAGGAAATAGCATCGATCATTGAAACTGGTTCCAACTTGAAGGAAGTTCGCAAAATTTCTCGTGCTGTGCGCCTTACTTTGGCGTTAAGGTCCAAACTCACTGCTCCTGTTCTCTCTTCTTTCCTTCATTATGTTCTTCCTCCTCATTCTACCTTATCTTCTTATCTTCCCAATTCAAAGGGTGGTGATCATGAGATGGAAGTGGACACTGCAACATCTGCAGCTATTCAAACTCCAGCCAAGCACTTGTTGCCAGAGCTAGAAATCTACTGTTACTTCCTCGTGCTTCTTTTTCTGATTGATCAGAAACGATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATTGCTTCGAGACTATACTTTTATTACTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGTACCCTCTTTCAGTTGCACCGGATTGCTACCTTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCGAAGGCTCCACGATTTGAGGCACATTCAAACCAGCAGTTCTGTCGCTATCTCTTCTACCTCGGGAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGGTTTCGGATTCAGTGTAACAAGTGGGCCATTATAGTTCGTTTACTGTTGGGAGAAATTCCTGAGAGGACTATCTTTGTCCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTTAGGATTGGTGATTTAGAGCTCTTTAGGAATGTTGCAGAGAAGTATGCTACTACTTTCAATACAGACGGAACCAATAATTTGATCGTTCGATTGCGCCATAATGTCATCAGGACTGGTTTGCGTAACATCAGTATATCGTATTCTCGCATCTCACTGGCCGATGTAGCTCAGAAATTGAGGTTGAGCTCTGCAGATCCCATTGCTGATGCTGAAAGCATTATATCAAAGGCTATCCGTGATGGGGCAATTGATGCGACATTGGATCATGCTAATGGATGGATGGTGTCCAAGGAAATTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGTTTTCCAAAAAACACACACAAGGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAGCAAGAGCAAGAACTGGCAAAGCATATTGAGGAGGAAGATGATGATGATGACTTCTGA 1452 0.4311 MTQDEEMKDLPTPSQSIPSTLQHLKEIASIIETGSNLKEVRKISRAVRLTLALRSKLTAPVLSSFLHYVLPPHSTLSSYLPNSKGGDHEMEVDTATSAAIQTPAKHLLPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGTLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFNTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANGWMVSKEIGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0749 483 Pfam PCI domain 306 411 IPR000717 -
Mtr1g0749 483 Gene3D - 237 444 - -
Mtr1g0749 483 MobiDBLite consensus disorder prediction 449 483 - -
Mtr1g0749 483 ProSiteProfiles PCI domain profile. 234 415 IPR000717 -
Mtr1g0749 483 MobiDBLite consensus disorder prediction 449 472 - -
Mtr1g0749 483 Pfam Proteasome regulatory subunit C-terminal 415 481 IPR013586 GO:0000502|GO:0030234|GO:0042176
Mtr1g0749 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 481 - -
Mtr1g0749 483 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 340 433 - -
Mtr1g0749 483 SMART PINT_4 340 433 IPR000717 -
Mtr1g0749 483 Coils Coil 449 477 - -
Mtr1g0749 483 SUPERFAMILY "Winged helix" DNA-binding domain 343 413 IPR036390 -
Mtr1g0749 483 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0749 Mtr-Chr1 8444650 8450075 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0749 1 8444650 8450075 Mtr1g0749 1 8444650 8450075 ECH
Mtr1g0749 1 8444650 8450075 Mtr3g4296 3 56874370 56879329 PCT