Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0700 ATGGGAGTTCCGGCCTTCTATAGGTGGCTCGCCGAGAAATACCCGATGGTTATTGCCGATGCGGTTGAAGAGGAACCAGTGGTTATCGAAGGCGTTCAAATTCCGATAGACACCAGCAAACCCAACCCTAATAACCTTGAATATGATAATCTCTATCTTGACATGAATGGAATCATTCATCCTTGTTTTCATCCTGAAGATAGGCCATCCCCGACCTCTTTTGAGGAGGTGTTTGAGTGCATGTTTGATTACATTGATAGGCTGTTTAACATGGTGCGGCCTAGGAAGCTTCTCTTTATGGCTATTGATGGTGTTGCACCGAGGGCTAAAATGAACCAACAACGGTCAAGGCGGTTTAGGGCTGCTAAAGATGCATCTGATGCGGCTATTGAAGAATCAAGGTTACGAGAGGAATTTGAGAGGGAGGGCAGAAAACTTCCTCCTAAAGAGGAATCGGCAACTTTTGATTCAAATGTCATCACACCTGGAACTGAATTCATGGCTGTTCTGTCAGTTGCACTACAGTACTATGTGCATCTTAGGTTGAACAATGATCCTGGTTGGAGTAACATAAAGGTTATTCTTTCTGATGCAAATGTTCCCGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTTCAAAGAAATCTTGAAGGATTCAATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGGTCTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGTCAAGACAAATGCTTCCTGTGTGGTCAAATGGGTCATATGGCTGCGAACTGTGAAGGAAAGGCTAAAAGGAAGTCAGGAGAATTTGATGAAAAAGGAGACGCTATTGTTGCTAAAAAGCCTTTCCAGTTTCTGAATATTTGGACTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCTAATGCTCCTTTTGAGATCGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTCGTTGGCAATGATTTCCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCGATCAACTTGCTGATGGCAGTATACAAGAAGGAACTTAAGGGAATGGGTGGCTATTTGACAAACGGTAGCAAGCCAAATTTGAGCAGAGTTGAGCATTTTATTCAGGCTGTTGGATCATATGAAGATAGCATATTCCAGAAAAGAGCTCGAATGGAACAGCGAACGGTGGAAAGAATAAAGCGTCAGAAGTCACAAGCAAGAAGAGGAGATGATGTTGGGCCTCAAGTTCAACCCGAGTCTCTAGTTGCAGTTTCTAAATTCCACGGTTCTCGTCTTGCTTCAGCTCCAACGCCTGCACCATTTCAACAATCTGGGCCCACCTCAGTTAGAAAAGGCAATAAAGAAGTCTTTGAGAGGCCCAGTAAAGTTTCTAAGTTATCTTCAGGAGCAACTGCTGCTGCTGCAATTGTTGAAGCCGAGAATAGTCTTGAAATAGATGTTGAAGATAACCAAGATGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAATCTGATGTGTTCAACTCAAAAGGTGGTCATGAGGACAAGATCAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTCAGACTCCCGAGGAACTTGATGCTATACGGAAAGATGTTGTCTTGAAATACACCGAGGGTCTATGTTGGGTGATGCATTATTACTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTGAAGGGCCTTGGTGAGCTTAATATTAACTTTGAGTTGGGTACTCCATTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCCGCTGCAAGCTCTCATGCGCTGCCTGAGCCGTATAGGAAACTTATGACTGATCCAACCTCGCCAATTATTGACTTTTATCCAATAGACTTTGATGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCGAAGTTGCCTTTTATTGATGAAGTGCGTCTTCTTCAGGAAGTTCGGAAAGTCGAAAACTTGTTAACACCGGAGGAAAAGCGACGAAATGCAATAATGTTTGAGATGCTTTTTGTGAATTCATGTCATCCTCTCTCTGCGTGCATTAGTACACTCGACAACAAATGTAGAAACATGTCCAACTCTGAACGTGCTGATGTTAAGGAAAAAATTGACCCCGTTGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTAGTGGAGAACCTTGCCCTCCCATCTTCAGGTCCCCTATTGCAGGCATGGAAGACATCATGGATAATCATGTCATATGTGCAATATATAGACTTCCAGATGCACATGAACATATAGCTCGACCACCACATGGAGTTAAGTTTCCAAAGAAGACTGTGACAATTGGGGATCTAAAACCTGAACCTATTCCATGGCATGAAGATAATGGGAGGAGATACAACGAAAGTGGAAGGAAAAACCCTCCGGGCTCCGTTTCTGGTCGCGAGCTTGGAGAGGCAGCACACAGACTCGTTGCCAATTCCTTACAGATCAGGACGGATGGAAATAGATACCATCATCCTAATGGATCAACGATGCCTTATAATGGACCAAGGGGTCACAGGCAATCATGGCCTCGTAATAACTATGAATCACACCCTGGCTATAACTATGAATCACGCCCAGGCTATGCTGCAATTCCACCGCCTTTATCAGCTCCTCCACAGTATGTACCTTACGCTGCTGCTCCTACTGCGCATTATGGTTATAACCAACCATACTCTCCACCTGTAATACCTAGTCCTCATCAACATCACTCGAATTCCTTTCCAAGAGGTGACCAAAACCCCAGATCACATCATTCTGATAGAAATAGCCACCATGTTAATGGCGGAAATGCAAGGCATTCCTCAGGAAACAATCAGAATCCCCGGTTTTCGAATACTCAAGGTTCATTTCCCCGTCAAGGTCACCATCACGACGCTGGTCGCCACAATCAACACTTCCAACCATATAGAGCTGACCAGCATTGGACTCCACGGGGTAACCCTAGTGGGTACAGGGAATATGGTCAACATTCAGCCAATCAATATTCTCTATTAGATAAAGGAGCAAGTAGGAAGCCAATGCCTCCACCCGGTCATAATCACAAATAA 3210 0.4349 MGVPAFYRWLAEKYPMVIADAVEEEPVVIEGVQIPIDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDASDAAIEESRLREEFEREGRKLPPKEESATFDSNVITPGTEFMAVLSVALQYYVHLRLNNDPGWSNIKVILSDANVPGEGEHKIMSYIRLQRNLEGFNPNTRHCLYGLDADLIMLGLATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKSGEFDEKGDAIVAKKPFQFLNIWTLREYLEYEMRIPNAPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKELKGMGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARMEQRTVERIKRQKSQARRGDDVGPQVQPESLVAVSKFHGSRLASAPTPAPFQQSGPTSVRKGNKEVFERPSKVSKLSSGATAAAAIVEAENSLEIDVEDNQDDLKIKLKGILRDKSDVFNSKGGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPTSPIIDFYPIDFDVDMNGKRYAWQGIAKLPFIDEVRLLQEVRKVENLLTPEEKRRNAIMFEMLFVNSCHPLSACISTLDNKCRNMSNSERADVKEKIDPVERDTCSGGMNGYISLCSGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDAHEHIARPPHGVKFPKKTVTIGDLKPEPIPWHEDNGRRYNESGRKNPPGSVSGRELGEAAHRLVANSLQIRTDGNRYHHPNGSTMPYNGPRGHRQSWPRNNYESHPGYNYESRPGYAAIPPPLSAPPQYVPYAAAPTAHYGYNQPYSPPVIPSPHQHHSNSFPRGDQNPRSHHSDRNSHHVNGGNARHSSGNNQNPRFSNTQGSFPRQGHHHDAGRHNQHFQPYRADQHWTPRGNPSGYREYGQHSANQYSLLDKGASRKPMPPPGHNHK* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 414 435 - -
Mtr1g0700 1069 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 982 1006 - -
Mtr1g0700 1069 PIRSF Exonuclease_Xrn2 1 1049 IPR017151 GO:0004534|GO:0005634|GO:0006139
Mtr1g0700 1069 CDD PIN_XRN1-2-like 51 312 - -
Mtr1g0700 1069 Pfam Xrn1 helical domain 325 822 IPR041412 -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 454 468 - -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 967 981 - -
Mtr1g0700 1069 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 1008 1022 - -
Mtr1g0700 1069 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Mtr1g0700 1069 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 952 966 - -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 872 904 - -
Mtr1g0700 1069 Gene3D - 146 382 - -
Mtr1g0700 1069 Gene3D - 1 136 - -
Mtr1g0700 1069 PANTHER 5'-3' EXORIBONUCLEASE 1 1033 - -
Mtr1g0700 1069 PANTHER 5'->3' EXORIBONUCLEASE 1 1033 IPR027073 -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 822 851 - -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 826 840 - -
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 451 472 - -
Mtr1g0700 1069 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Mtr1g0700 1069 MobiDBLite consensus disorder prediction 943 1069 - -
Mtr1g0700 1069 Gene3D - 610 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0700 Mtr-Chr1 7934337 7943628 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0700 1 7934337 7943628 Mtr1g0700 1 7934337 7943628 ECH