Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0697 ATGGCTTCCTTAGACGAAAAGGCTAAAAGTGTTGGAGGTGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGTCCTCTTGTGTCTTTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAATAGCAACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGAAAAAGAAGTATTTCCAGTATCTGAGTTTGGACTAAGCAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCCAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTATTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATTTACCGAGGTCAGCCGAAAAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAGAGCAGGCGATTCTGTTCTTTTTATCAGGGATGAGAAGTCGCAACTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCCGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCGTTCACGATTTTCTACAATCCAAGGGCATGCCCTTCAGATTTTGTTATTCCACTAGCCAAATACAGAAAATCTGTCTATGGGACTCAGCTGTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGGGTTAGTGTTTGGGAGATCGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCTGGATATTTGGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTGCCTGAAAATGGAGGAACAGTGGAGATCTCAAGCTCAATGCAAAATCTCTACCAAGAAAACATGAAGATGTTTTATAAACCACAAGTGATCAACAACAGTGGAGCCTTTTTACCTATCATGCAACAAGATTATTCTCCTACAAGAGTTCCCTTTCAAGATATGAAGTCCACACAGGCTCTAGAGAATCCGAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAATACCTTTAACATGCATTCATTGTTGAAAAATGACCAACCGGAAAAGTTGCAGCCTTTGGCCAAAACCGATAATTCAAAATTAGAATCCGAGGTGTTACCTGATCATATATTTGACTTCCCTTCTTTTGAAAGCTGCAGCAACATTGAAAAGGTGAATACAGCAAACCAATTAACATATCATAATCAAAACCAAAGTCAAAATCCATTACTCGCTCATACTAGTCCATGGACTATGCAGCAGCCTCAGTTAGAATCATCAATGTCGCATCCTCAACTTATTGACATGGTCCAACCCGATTCTTCTATTGTAAACAGCATGCTTCCTCAGCTAGACGTCGATGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCTATACCCTCGATGAACCAAGAAGTGTGGGATCAATATGTCAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAACGTTGATGCTAGTAATAGTGTGAGTACCACTGTGGTTGATCCTTCTACTTCAAACACCATTTTTGACGACTTTTGCTCAATGAAGGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAGCTGAGTCCCACGCCTTTTCTCTGCGAGACAATTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGCTTTCTGCAGAATAATAATTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCCATTGATGTGACTACTTTCAAAAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCTGGATGGAAATTAGTATATGTAGATTATGAGAGTGATGTTCTGCTTGTTGGAGATGATCCCTGGGAGGAATTTGTGGGGTGTGTTCGCTGTATACGAATATTATCTCCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTAAATAGTGGAGCATTGCAAGGAATCAATGTGTGA 2583 0.4166 MASLDEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLSKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENGGTVEISSSMQNLYQENMKMFYKPQVINNSGAFLPIMQQDYSPTRVPFQDMKSTQALENPKVHLSSTESIPNNTFNMHSLLKNDQPEKLQPLAKTDNSKLESEVLPDHIFDFPSFESCSNIEKVNTANQLTYHNQNQSQNPLLAHTSPWTMQQPQLESSMSHPQLIDMVQPDSSIVNSMLPQLDVDEWMMYSSCQPQVVNPSIPSMNQEVWDQYVKNFNLRDLSAESNNQSEICVNVDASNSVSTTVVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0697 860 CDD B3_DNA 145 246 IPR003340 GO:0003677
Mtr1g0697 860 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr1g0697 860 Gene3D - 143 247 IPR015300 -
Mtr1g0697 860 Gene3D - 750 843 - -
Mtr1g0697 860 Pfam AUX/IAA family 744 841 IPR033389 -
Mtr1g0697 860 SUPERFAMILY DNA-binding pseudobarrel domain 136 275 IPR015300 -
Mtr1g0697 860 SMART B3_2 146 248 IPR003340 GO:0003677
Mtr1g0697 860 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Mtr1g0697 860 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Mtr1g0697 860 SUPERFAMILY CAD & PB1 domains 755 833 - -
Mtr1g0697 860 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 858 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr1g0697 860 ProSiteProfiles PB1 domain profile. 754 838 IPR000270 GO:0005515
Mtr1g0697 860 Gene3D - 310 382 - -
Mtr1g0697 860 PANTHER AUXIN RESPONSE FACTOR 5 27 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0697 Mtr-Chr1 7846928 7852164 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr1g0697 AUX_IAA 2.2e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0697 1 7846928 7852164 Mtr1g0697 1 7846928 7852164 ECH