Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0694 ATGGGTTCCGATATTCCACAAGATGGATTGAAGAAACTGGAGTATCTTTCACTCGTATCCAAAGTATGCACCGAGTTAGAATCTCACACCGGCACCGGCGACAAAGTTCTCGCCGAATTCATCACCGATTTAGGTCACTCTTCCAACTCCGTCGAAGAATTCGACGCTAAATTGAAAGAAAACGGTGCTGAAATGCCCGATTATTTTGTCAGAACGCTTCTCACTATAATTCATGCGATTCTTCCTCCAAAACCTAAGAAGCAGAGAGAAAATCTGAAAGAGAATGCCAATTCGAACACGAAGTTTAAGGCTTTGGCGATTTCAGATGATAGGGGTCGTGCTGAGAAGCTGAGAGAAGAGATTGAAATTGAAGCTAGAGAGAAACAGAAGCCACCAATGGAAGATGATGATGGTTATAGAGATAGGGATAGAAGAGATAGACATAGAGATAGATATGATAGAAGGGGGAATGATAGAGATAGAGATAGGCGTGAAAGAGATGATAAAAGGGGGAGTGATAGAGATCGTGGTGATAGGCGCGATAGAGATGATACAAGAGGCAATGCTAGAGATAGAGATAGGTATGAAAAAGATGATAAAAGAAGAGATGATAGGGATAGGGATCGATATGAAAGAGATGATAAAAGGGGGAATGATAGAGATAGGGATAGGGATAGGGATTGGTATGAGAGACGAAGGAGAGATGAGTATGAGGAGGACGAAGGTGGGAGGGAGGAGAATGGTGGTGATGAGAAAGGGAGGGGAGGAAGAGATACGAGGCGTGGTGGTGGTTCTGGTGAGCCGGAGTTGTATATGGTTTATAAAGGAAGAATTTCAAGGGTGATGGATACGGGGTGTTTTGTTTCGTTGGATGAGTTTAGAGGGAAAGAGGGCTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTGCGAATGCTAAGGAGGTTGTTAAGAGGGATCAACAGGTTTATGTGAAGGTGATATCAGTTTCTGGGTCGAAGTTGAGTTTGTCTATGAGGGATGTTGATCAGCATAGTGGGAAGGATTTACTTCCGTTGAAGAAGAGTTCGGAGGAGGAGGCTTTTAGGACGAATCCACAAGATTCAAAGGATGGGCCGGTGGCGAGAACTGGGCTTTCTGGGATTAGGATTGTGGAGGAGGATGATATGGGTTCTTCGCGTAGGCCGTTGAAGAGAATGAGCTCTCCTGAGAGATGGGAAGCGAAACAGTTGATTGCTTCAGGGGTTTTGAGTGTTTCAGAGTATCCGACTTATGATGACGAGGGAGATGGAGTGATGTACCAAGAAGAAGGTGCTGAGGAAGAGCTTGAGATTGAGATGAATGAAGATGAGCCCGCTTTTTTGCAAGGGCAGAGCAGATACTCGATGGATATGTCTCCTGTTAAGATCTTTAAGAATCCTGAAGGTTCTCTAGGCCGTGCTGCTGCACTACAGTCCGCCCTTATAAAGGAGAGAAGGGAAGTACGAGAACAGCAGCAGCGTACCATGCTTGATTCTATTCCAAAGGATCTCAATCGTCCTTGGGAAGATCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCTCAGGAGTTGAGGGGTGTTGGTTTATCGGCCTATGATATGCCTGAATGGAAGAAGGATGCCTATGGGAAAACCATTACTTTTGGGCAAAGGTCGAAGCTTTCTATTCAAGAACAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAGTTGATTCAGGCTGTCCATGATAATCAGGTCTTGGTTGTGATTGGTGAAACCGGTTCGGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACCAGAGGTAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCCGAAGAGTTTGGGTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGATTTGAGGATTGCACTGGGCCTGATACTGTAATCAAGTACATGACCGATGGTATGCTTCTTAGAGAAATATTGGTTGATGAGAATCTGTCGCAGTATTCTGTTATAATGCTTGATGAAGCCCATGAGAGAACTATTCATACGGATGTTCTTTTCGGACTACTGAAGCAGCTGGTGAAGCGTAGACCCGAGTTGCGATTGATTGTCACATCAGCTACTCTTGATGCTGAAAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGAAGAACTTTTCCTGTGGAGATACTTTATACTAAACAGCCAGAAAGCGATTACTTGGATGCATCTTTGATCACTGTCCTACAGATTCATTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAGGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGCGAATGAAAGGATTAGGTAAGAATGTCCCAGAGCTGATCATTTTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTCGATCCTGCTCCTCCCGGGAAACGGAAAGTGGTTGTGGCTACAAACATTGCCGAGGCATCTTTGACTATTGACGGAATATTTTATGTTATTGATCCGGGGTTTGCTAAGCAAAATGTTTATAACCCGAAGCAAGGTCTTGATTCCTTGGTGATAACTCCGATATCACAAGCGTCTGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAGTGTTATCGCCTCTATACCGAGAGTGCATATAGAAATGAAATGTCTCCTACTTCTATTCCAGAGATTCAAAGGATAAATTTAGGCATGACAACTCTTAGCATGAAAGCCATGGGCATAAATGATCTTCTGTCATTTGATTTTATGGATCCACCATCACCTCAAGCACTTATTTCCGCCATGGAGCAGCTTTACAGTCTTGGAGCTTTGGATGAAGAGGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAGTTTCCTTTGGATCCGCCACTGTCCAAGATGTTGCTTGCCAGTGTAGATCTTGGGTGCAGTGATGAGATTCTGACCATAATTGCCATGATCCAGACTGGCAATATATTTTACAGGCCCAGGGAGAAACAAGCCCAAGCAGATCAGAAAAGGGCAAGGTTTTTCCAGCCAGAGGGTGACCATCTTACGCTTCTTGCTGTTTATGAATCCTGGAAAAATAAAAACTTTTCTGGACCTTGGTGTTTTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGCGCAGGATGTAAGGAAACAACTTCTCACCATCATGGATAAGTACAAATTGGATGTTGTGAGCGCTGGAAAAAACTTCACAAAGATTAGGAAGGCTATCACTGCAGGGTTCTTTTTTCATGCAGCAAGAAAGGACCCCCAGGAAGGTTACAGAACACTAGTTGAGAATCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGGCAACCAGACTGGGTCATATACCACGAGCTTGTAATGACAACAAAGGAATATATGCGCGAAGTCACAGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTTGCCGATCCCACAAAGATGAGCAAACGGAAGCGTCAAGAGCGTATTGAACCACTTTATGATAGATACCACGAGCCAAACTCATGGCGTTTGAGTAAACGCCGTGCATGA 3672 0.4406 MGSDIPQDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSNSVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKKQRENLKENANSNTKFKALAISDDRGRAEKLREEIEIEAREKQKPPMEDDDGYRDRDRRDRHRDRYDRRGNDRDRDRRERDDKRGSDRDRGDRRDRDDTRGNARDRDRYEKDDKRRDDRDRDRYERDDKRGNDRDRDRDRDWYERRRRDEYEEDEGGREENGGDEKGRGGRDTRRGGGSGEPELYMVYKGRISRVMDTGCFVSLDEFRGKEGLVHVSQMATRKIANAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHSGKDLLPLKKSSEEEAFRTNPQDSKDGPVARTGLSGIRIVEEDDMGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0694 1223 ProSiteProfiles S1 domain profile. 271 340 IPR003029 GO:0003676
Mtr1g0694 1223 Gene3D - 266 351 IPR012340 -
Mtr1g0694 1223 CDD DEXHc_DHX8 565 743 IPR044762 GO:0000398|GO:0003724|GO:0005524
Mtr1g0694 1223 Gene3D - 542 745 IPR027417 -
Mtr1g0694 1223 Coils Coil 481 501 - -
Mtr1g0694 1223 CDD S1_DHX8_helicase 271 347 - -
Mtr1g0694 1223 Pfam DEAD/DEAH box helicase 576 726 IPR011545 GO:0003676|GO:0005524
Mtr1g0694 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 768 941 IPR001650 -
Mtr1g0694 1223 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1108 1183 IPR011709 -
Mtr1g0694 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 580 743 IPR014001 -
Mtr1g0694 1223 Pfam Helicase conserved C-terminal domain 770 900 IPR001650 -
Mtr1g0694 1223 Gene3D - 746 920 IPR027417 -
Mtr1g0694 1223 CDD SF2_C_RHA 747 908 - -
Mtr1g0694 1223 MobiDBLite consensus disorder prediction 348 379 - -
Mtr1g0694 1223 PANTHER - 215 1223 - -
Mtr1g0694 1223 SMART S1_6 269 340 IPR022967 -
Mtr1g0694 1223 SUPERFAMILY Nucleic acid-binding proteins 270 347 IPR012340 -
Mtr1g0694 1223 SMART helicmild6 796 900 IPR001650 -
Mtr1g0694 1223 Pfam Helicase associated domain (HA2) 962 1050 IPR007502 GO:0004386
Mtr1g0694 1223 MobiDBLite consensus disorder prediction 121 224 - -
Mtr1g0694 1223 MobiDBLite consensus disorder prediction 348 366 - -
Mtr1g0694 1223 Gene3D - 945 1043 - -
Mtr1g0694 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 1093 IPR027417 -
Mtr1g0694 1223 Pfam S1 RNA binding domain 272 333 IPR003029 GO:0003676
Mtr1g0694 1223 PANTHER ATP-DEPENDENT RNA HELICASE 215 1223 - -
Mtr1g0694 1223 MobiDBLite consensus disorder prediction 237 269 - -
Mtr1g0694 1223 SMART ha2_5 961 1051 IPR007502 GO:0004386
Mtr1g0694 1223 SMART ultradead3 568 752 IPR014001 -
Mtr1g0694 1223 MobiDBLite consensus disorder prediction 237 264 - -
Mtr1g0694 1223 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 685 694 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0694 Mtr-Chr1 7824127 7831775 Proximal