Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0679 ATGACCACCGCTACCTACCTCCTCTTCCTTCTTCCAATTCTCATAACCACCATCACCACCACCCCATATCTGGTAGCCGCCGGTAATGGTCAATGGCAAGTACTACAAAAAAGCATCGGCATTGTAGCCATGCACATGCAACTTCTTCACAACGATCGCATTGTCATATTTGATCGTACTGACTTTGGCTTATCCAAACTCCCTTTACCTAACGGAAAGTGTCGTCATGACCCCAGAGAAACCACCGTTAAAACCGATTGCACGGCTCATTCGGTCGAATATAACATCAAATCCAACACTTTCCGTCCATTGTTTGTTCAAACCGACGTTTGGTGTTCATCCGGTAGTGTGAATCCTAAAGGAACACTTGTCCAAACCGGAGGCTACAATGACGGAGACCGAACTATTCGTATGTTCGATACTTGTAACAACTGTGATTGGCAGGAATTTGACGGCGGACTTGCTGCTCGGAGATGGTATGCCACCAATCATATTCTGCCCGACGGACGTCAAATTATCATTGGCGGTAGAAAACAATTTAACTATGAATTTTACCCTAAAAACAACATTGGTGTATATCGTTTGCCGTTTTTGGAACAGACTAATGATGCTGGTGCAGAGAATAATTTGTATCCATTTGTTATTCTCAATGTGGATGGCAACCTCTTCATCTTTGCTAACAACAGAGCTATCCTCTTTGATTATACTAAGAATGTAGTGGTGAGAACATTTCCTCAAATCCCAGGTGGGGACCCTAGGAGTTATCCAAGCTCAGGTTCAGGGGTACTATTGCCATTGAAGAATCTACAATCAAAGTTTATAGAAGCTGAGGTTTTGATTTGTGGTGGAGCTCCAAAAGGATCTTATCAAAAAGCATCAAAGCGTGAGTTTCTTGGAGCTTTGAATACTTGTGCCCGAATCAAAATAACCGACCCAAATCCAACATGGGTTGTGGAGACCATGCCTAGGGCTAGAGTAATGGGTGACATGGTAATGCTCCCAAATGGGGATGTTTTGATAATTAATGGAGCGGGTTCAGGGACGGCGGGGTGGGAATACGGACGAGACCCAGTTCTAAATCCGGTTCTTTACAAAACTAATAACCCAATAGGAGCACGATTTGAATTACAAAACCCATCTCATACACCTCGAATGTATCATTCCACTGCAATTTTGGTTCGTGATGGTAGGGTTCTTGTTGGTGGTAGCAACCCTCACATTGGTTACAATTTTAACAATGTGTTGTTTCCAACTGAACTTAGTATCGAAGCTTTTTCTCCTTCTTACCTTGAACCTCGCTTCGCGAATGTTCGTCCAAGGATTGTGGCTTCTACTTCGGAATTGCAAAAGCACGGTCAAAAGTTGGGATTGCGATTTCAAGTAAAAGCAGCATTGGATAAGAATTTGGTATATGTTACGATGTTGGCACCACCTTTTAACACACACTCATTCTCCATGAATCAGAGGTTGTTGGTGTTGGAGTCAAACAAAGTGAATATTGTGGAGGGAACAACGTATGATGTTCAGGTTACTATGCCGGGTTCACCTATTCTTGCGCCTCCTGGATTTTATCTACTATTTGTGGTTCATAAAGAAATTCCTAGTGAAGGAATTTGGATACAAATACTTTAA 1632 0.4252 MTTATYLLFLLPILITTITTTPYLVAAGNGQWQVLQKSIGIVAMHMQLLHNDRIVIFDRTDFGLSKLPLPNGKCRHDPRETTVKTDCTAHSVEYNIKSNTFRPLFVQTDVWCSSGSVNPKGTLVQTGGYNDGDRTIRMFDTCNNCDWQEFDGGLAARRWYATNHILPDGRQIIIGGRKQFNYEFYPKNNIGVYRLPFLEQTNDAGAENNLYPFVILNVDGNLFIFANNRAILFDYTKNVVVRTFPQIPGGDPRSYPSSGSGVLLPLKNLQSKFIEAEVLICGGAPKGSYQKASKREFLGALNTCARIKITDPNPTWVVETMPRARVMGDMVMLPNGDVLIINGAGSGTAGWEYGRDPVLNPVLYKTNNPIGARFELQNPSHTPRMYHSTAILVRDGRVLVGGSNPHIGYNFNNVLFPTELSIEAFSPSYLEPRFANVRPRIVASTSELQKHGQKLGLRFQVKAALDKNLVYVTMLAPPFNTHSFSMNQRLLVLESNKVNIVEGTTYDVQVTMPGSPILAPPGFYLLFVVHKEIPSEGIWIQIL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0679 543 CDD E_set_GO_C 434 542 IPR015202 -
Mtr1g0679 543 Pfam Galactose oxidase-like, Early set domain 438 542 IPR015202 -
Mtr1g0679 543 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 20 542 - -
Mtr1g0679 543 SUPERFAMILY E set domains 434 542 IPR014756 -
Mtr1g0679 543 Gene3D - 26 433 IPR037293 -
Mtr1g0679 543 PANTHER SECRETED PROTEIN-RELATED 20 542 - -
Mtr1g0679 543 Pfam Glyoxal oxidase N-terminus 44 283 IPR009880 -
Mtr1g0679 543 SUPERFAMILY Galactose oxidase, central domain 92 431 IPR011043 -
Mtr1g0679 543 Gene3D Immunoglobulins 437 543 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0679 Mtr-Chr1 7640404 7642740 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0679 1 7640404 7642740 Mtr1g0679 1 7640404 7642740 ECH
Mtr3g4247 3 56331086 56333317 Mtr1g0679 1 7640404 7642740 PCT