Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0667 ATGGCTGGTTTCTTCTCTCTAAGCAGTGGAAGAGGCAAAGAAGAAGCAAGAGAACAAGAAGAAAATAACAACAACAGTGGAAATAATAATAATCAGTTTTTGTTCAGAAACGAAGAGATCTACAACAAAGGTTTTGAGATATGGCCACAACAACATCAACAATCTTCTTTTCATCATCATCAACAACAACATCAACAAAACATTAACAATTTTTACTCTTTTGGTGTTGGAAGTTCGAGAAGAAACGACGACAACAACAACAACAACGACAACGTTTCTGTTTCATTTTCTGATGAATCAACAAGATTTGGTTTAACAGTTATGAGGTCTTCAAGTGGTGGTTTAGGTGGTGGTGGAATGAACTGTCAAGATTGTGGTAACCAAGCTAAGAAAGATTGTCCACATCTTAGATGTAGAACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACTCATGTGAAAAGTACTTGGGTTCCAGCTGCTAAACGCCGCGAACGGCAGCAACAACTCACGTCGTTGCAGCAACAAAATCAGCAGCAGCAACAACAGTTTCACTCATCAAGAAGACACAGAGAAAATCAAAATGATCCTTCTGGAGCTTCTGGTTCTCTAACTTGTACTCCAGTACCTATCACTACCACAGGGTTGGAGTTGGGAAATTTTCCACCGGAGCTGAATTCACCGGCGGTGTTCCGGTGTGTAAAAGTGAGTGCAATGGATGCACAAGACGAACGTTATGCTTATCAAACTGCTGTTAACATAGGAGGAAGAGTTTTCAAGGGAATTTTGTATGATCAAGGACTTGAAGGTAGCTACACTAGTCCAAATGCTGCTGTTGCTGGTGGCGAGGGTTCTACCGGTGGCGGCGGTGGAAGTGGCGGCGAAGGAAATCAACAAAATCTCATAACAACCACAACAACAAATGTTAACAATCCATTTGAGTATTCTTCACTATATCCAGCTCCTCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1017 0.4159 MAGFFSLSSGRGKEEAREQEENNNNSGNNNNQFLFRNEEIYNKGFEIWPQQHQQSSFHHHQQQHQQNINNFYSFGVGSSRRNDDNNNNNDNVSVSFSDESTRFGLTVMRSSSGGLGGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQQQQQFHSSRRHRENQNDPSGASGSLTCTPVPITTTGLELGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEGSYTSPNAAVAGGEGSTGGGGGSGGEGNQQNLITTTTTNVNNPFEYSSLYPAPLNAFMAGTQFFPPPRS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0667 338 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 121 163 IPR006510 -
Mtr1g0667 338 MobiDBLite consensus disorder prediction 165 184 - -
Mtr1g0667 338 MobiDBLite consensus disorder prediction 279 300 - -
Mtr1g0667 338 Pfam Domain of unknown function (DUF702) 119 269 - -
Mtr1g0667 338 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 336 - -
Mtr1g0667 338 MobiDBLite consensus disorder prediction 163 207 - -
Mtr1g0667 338 MobiDBLite consensus disorder prediction 1 32 - -
Mtr1g0667 338 MobiDBLite consensus disorder prediction 72 96 - -
Mtr1g0667 338 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 221 268 IPR006511 -
Mtr1g0667 338 Coils Coil 163 183 - -
Mtr1g0667 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 336 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0667 Mtr-Chr1 7487997 7489816 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr1g0667 DUF702 1.3e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0667 1 7487997 7489816 Mtr4g2143 4 34928039 34929383 ECH
Mtr1g0667 1 7487997 7489816 Mtr1g0667 1 7487997 7489816 ECH
Mtr1g0667 1 7487997 7489816 Mtr3g4232 3 56187417 56189548 PCT