Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0663 ATGATGAAATCAGGGATGGGAATTGAAGAGAGAAAACAGCTGAAAAGACCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGAGGACCTGAAAATGCAAGTTGCACTTACAAAGGTGTGAGGCAGAGAACATGGGGTAAATGGGTGGCTGAAATTCGCGAACCTAATCGTGGTGCTCGTCTTTGGCTTGGTACTTTTGAAACCTCTCATGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAACTTTATGGTTCTGATGCAAAACTTAACCTCCCAGAACTTTCTACACCCCCTCAAAATACTACTTCATCACCCTCTCCTACACCACCTCAAATGCAACAACAACAACAACATCCTCATATTCAAATTCAACCCAACAACAACAATAACATTAACAATAGCTTCAATATTTGCAACAACATAAACATGAACAACAACAACAATAATAGTCCTGTTTTTGTGTCTCTGTCTTCTCAACAAGTTGGTGGTGATATTACACCAATATATAGCAGTGATAATTCTGTTATGTCATTTCCATTGGATAGTAATAGTACTATTACAAATACAATGGAATCAAAGGGTATGGAGATTAGTAGTGATTCATTTTTTGGAACAGTGAATTATGAAACCATGCCAGTAATTGATGATGATTCAATTTGGACAGAAGCTGCTATGTCTTTAGATGCTGCAATTTCAATGGATTTTCCAATGATTGTTGATGATGCTGATGGAATTTATAATTCAGGTGCAAATTTTGCTGAAGTTGGTGCTTGGGATTCTCTACAAACTCCATGGTGCATGTAA 816 0.3787 MMKSGMGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSTPPQNTTSSPSPTPPQMQQQQQHPHIQIQPNNNNNINNSFNICNNINMNNNNNNSPVFVSLSSQQVGGDITPIYSSDNSVMSFPLDSNSTITNTMESKGMEISSDSFFGTVNYETMPVIDDDSIWTEAAMSLDAAISMDFPMIVDDADGIYNSGANFAEVGAWDSLQTPWCM* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0663 271 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Mtr1g0663 271 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Mtr1g0663 271 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Mtr1g0663 271 MobiDBLite consensus disorder prediction 1 38 - -
Mtr1g0663 271 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Mtr1g0663 271 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Mtr1g0663 271 MobiDBLite consensus disorder prediction 96 133 - -
Mtr1g0663 271 MobiDBLite consensus disorder prediction 93 133 - -
Mtr1g0663 271 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Mtr1g0663 271 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Mtr1g0663 271 MobiDBLite consensus disorder prediction 1 17 - -
Mtr1g0663 271 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 177 - -
Mtr1g0663 271 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 177 - -
Mtr1g0663 271 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0663 Mtr-Chr1 7434732 7436115 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0663 AP2 9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0663 1 7434732 7436115 Mtr1g0663 1 7434732 7436115 ECH
Mtr1g0663 1 7434732 7436115 Mtr3g4225 3 56111500 56112477 PCT