Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0658 ATGTATCCGAACCAAGCGTTTTCTTCGGGATCTTACGCCGAGATGATTTCTGGGAATACTTTGTTACCTCATAATTACAGTGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATGACATCTATGGATGATACAATGAATATGCTGTCTATTGATCAGGGGCATTCCAATGCTACTACGAGCGATCCAAGGACACAATTCGGACTCGTTGAGAGCGAGCAAAATGTACAATGCCAAGGCCTGTCTCTTAGCCTTGGGACAATGATGCCTTCCTTTCAATATCAGTATCCCGGCAACAGTTTCACCTCACTAATGAATGCTCAAATTTCAAACTTGAAGGGGTCTGCATCTCTTAAGGATGATGAGGCTGAGTGCATGGCATCTTTGTCTTCTGGAGGATTTCAAAACAATGTCAAAAGGGAGGGTTTGTATAATCCACATCCTTCAATAGGCCTTAATGAAGGCCAATCTGATCCGTGCCTGCAAGGATCAGCAGTTATTCCGAACAATGCCCTTAACTCTCACTACCTTAAGGCAGCACAGGAACTTCTTGATGAAATAGTTAATGTCCGAAAGGGCTTGAAACAAACCGGATTGGAAAAACAACAAAGTTTTCACGATGCTGGTTTAGATGCTTCCAAAGATTCTGATGGAAAATCTACAAGTCAATCTATGCAAGTATCTTCAGGCCCTAATGGTTCTAATGCAAACAACTCTTCATGTGAGCTATCTCCCGCGGAACGACAGCATTTATTGGACAAGAAAACAAAACTTTTGTCCATGTTGGATGAGTTAGACAAAAGATACCGACAATACTGTCATCAAATGCAGATTGTTGTGTCATCTTTTGACATGGTTGCTGGTTGCGGCGCAGCCGAACCATACACTGCTCTTGCTTTGCGCACCATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAGTTGACTCAAAGGAGCCTTGGTGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAACAGCTTAGACAACAAAAAGCTCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCTGAAAGCTCTGTGTCAATACTCCGTGCGTGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATCATGTTGGCAAGACAAACAGGCTTGACCAGAAACCAGGTGGCGAATTGGTTCATTAATGCGAGGGTGCGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGCAATCTTTTATCAGAAAACACGCCAAAAGCTCCGAGAGACGATGATGTTCGAGTGTGGGATGATAAAAGGGAAGAGTCTCATGACAAGTTAATGAATGTTGATGGTGCTCAACAACAAGGTCAAATTGCAGGGTTGAAGTTAGATCATGCATCCTCCTCAACCACAGAATTGGATAGAGGGATTCAAAGTAGCGATCATTGGACTAATGTGATGGATTCTAGAATTGGGAAAATGCAAGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATCCACCTATCTCAATCAACCAAAATGGTGATGGCTGCATAATGGATTCTACTCCTACAACTTATGATGATTTATCAGAGTTGAATAACTTTGGTGTTGGTGGCCATGTCTCACTTGCATTGGAGTTGAGGAACTCTGAAAGTGATGGATTTGGTTTGTCCAATGATGACATCAATAAAAGGCGTAATCAAGCAATGGCTTCTTCACCTGATACTGATTTGTTAGACTATCACTTCACAGACACTGGAAAGCAACAACACAAGTTTGCCAACCCTCATTTGTTACATGAGTTTGTTGTCTGA 1884 0.4225 MYPNQAFSSGSYAEMISGNTLLPHNYSESVGGQNELKFMTSMDDTMNMLSIDQGHSNATTSDPRTQFGLVESEQNVQCQGLSLSLGTMMPSFQYQYPGNSFTSLMNAQISNLKGSASLKDDEAECMASLSSGGFQNNVKREGLYNPHPSIGLNEGQSDPCLQGSAVIPNNALNSHYLKAAQELLDEIVNVRKGLKQTGLEKQQSFHDAGLDASKDSDGKSTSQSMQVSSGPNGSNANNSSCELSPAERQHLLDKKTKLLSMLDELDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQLTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTPKAPRDDDVRVWDDKREESHDKLMNVDGAQQQGQIAGLKLDHASSSTTELDRGIQSSDHWTNVMDSRIGKMQGDQQRFNMNNSPYSNPPISINQNGDGCIMDSTPTTYDDLSELNNFGVGGHVSLALELRNSESDGFGLSNDDINKRRNQAMASSPDTDLLDYHFTDTGKQQHKFANPHLLHEFVV* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0658 627 SMART HOX_1 357 421 IPR001356 GO:0003677
Mtr1g0658 627 CDD homeodomain 357 418 IPR001356 GO:0003677
Mtr1g0658 627 Pfam Associated with HOX 172 315 IPR006563 -
Mtr1g0658 627 Gene3D - 354 432 - -
Mtr1g0658 627 SUPERFAMILY Homeodomain-like 358 424 IPR009057 -
Mtr1g0658 627 SMART prehox3 164 316 IPR006563 -
Mtr1g0658 627 MobiDBLite consensus disorder prediction 201 243 - -
Mtr1g0658 627 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 589 - -
Mtr1g0658 627 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Mtr1g0658 627 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 589 - -
Mtr1g0658 627 MobiDBLite consensus disorder prediction 215 243 - -
Mtr1g0658 627 MobiDBLite consensus disorder prediction 426 448 - -
Mtr1g0658 627 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Mtr1g0658 627 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0658 Mtr-Chr1 7371073 7375290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr1g0658 POX 5.5e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0658 1 7371073 7375290 Mtr1g0658 1 7371073 7375290 ECH
Mtr1g0658 1 7371073 7375290 Mtr3g4215 3 56002648 56005718 PCT
Mtr3g4216 3 56010288 56014047 Mtr1g0658 1 7371073 7375290 PCT