Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr1g0648 | ATGGGCTCAGCTTGTTGTGTCCCGGCAAAGAATCATAATGTTACTAAAAGTACTGGAGGTGAGAGTTTGGATAGAGATGTAACACGATCACCGTCATGGAGCTTTCGACGGGATAGTCGTGGGCGTTCGATGAAGTTCTCTGTCGACGAGGCATTGGCTGAGAATATAATGACACCTTCTTCCGATCTGTCAATGTCAAGCTATTTTTCAACAGTGGTGAAGGATCCAGGAGAGTCTTCAATACCAAATCATTCATTTTCATTACCTTCAATTTTCCCAACACCTACAGCAGGTCCATCATCTAGTCGTGATCATCGTCATCATCACTCCAACTCTACCCCAACAAGATGGGCGCATCGTTCTTTGGGACAGCTTTCCGATAATCAGATGATCACGTATCTAAAATCACCAGACAGCTCAACTTTTGAAGGAAGGGCATCATTTGTACTCTCCACTTACAGCAATGAAGTTGAAGCTGGATCCCAATGTGGATCGTCCGATCGCTGGTCAGTGCACACCTTTTCTGAGCTGGTGTCCTCCTCACAAAGAGGAAGGTGGTCTTTTGACAGTGAGTGTTTTGGCTCGGGTCGTCGCAAGATAAGTGCATCCAGTAGCAGGTTGTCAAATTCATCTTCCATGGATCTACAATCTTGTGGGATTTGCATGAGGCCTTTGTGTGACAAATCAGCAGGGATCAACCAAAAGTTTATTGCCAACATTGATCTCTCATCTGTTGCTATACTAGCATGCAAGCATGTATTTCATGCAGAGTGCTTAGAGCCTATGACTGATGATGCAGATAAGTATGATCCACCGTGTCCAATTTGTATGGTTGACGATAAGCATTCTTCGAAGGGTTCCAAAAAAGGTTTTTGGGCTGAAGCAGAGACAAAGGCCAAGAACCTGAAGATATCCAGAAAGCGTGTTGTTGATAGCTATCTTGATGGTGGTTCTGATGTTTTTGATCGCCAAGAAGATATTGAATTGCGAGGAAAGGTTTCAAAGAGTGAGGCTAGCTCCAGTACGAGGAGCTCTGTTGGAAAGCCCTTTTCACTTGTGTCAAAGTGGAAGCGATCTCTGTCGGAGGATGATTCTCCCAGGAACAAAGGCATTTGGCCAAGATATAGAAAAAGTTGA | 1137 | 0.4442 | MGSACCVPAKNHNVTKSTGGESLDRDVTRSPSWSFRRDSRGRSMKFSVDEALAENIMTPSSDLSMSSYFSTVVKDPGESSIPNHSFSLPSIFPTPTAGPSSSRDHRHHHSNSTPTRWAHRSLGQLSDNQMITYLKSPDSSTFEGRASFVLSTYSNEVEAGSQCGSSDRWSVHTFSELVSSSQRGRWSFDSECFGSGRRKISASSSRLSNSSSMDLQSCGICMRPLCDKSAGINQKFIANIDLSSVAILACKHVFHAECLEPMTDDADKYDPPCPICMVDDKHSSKGSKKGFWAEAETKAKNLKISRKRVVDSYLDGGSDVFDRQEDIELRGKVSKSEASSSTRSSVGKPFSLVSKWKRSLSEDDSPRNKGIWPRYRKS* | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 84 | 100 | - | - | |
| Mtr1g0648 | 378 | PANTHER | EXPRESSED PROTEIN | 1 | 42 | - | - | |
| Mtr1g0648 | 378 | PANTHER | EXPRESSED PROTEIN | 43 | 372 | - | - | |
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 357 | 378 | - | - | |
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 84 | 117 | - | - | |
| Mtr1g0648 | 378 | Pfam | Zinc finger, C3HC4 type (RING finger) | 218 | 276 | IPR018957 | GO:0046872 | |
| Mtr1g0648 | 378 | ProSiteProfiles | Zinc finger RING-type profile. | 218 | 276 | IPR001841 | - | |
| Mtr1g0648 | 378 | SMART | ring_2 | 218 | 276 | IPR001841 | - | |
| Mtr1g0648 | 378 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 279 | IPR013083 | - | |
| Mtr1g0648 | 378 | PANTHER | C3HC4-TYPE RING ZINC FINGER PROTEIN | 43 | 372 | - | - | |
| Mtr1g0648 | 378 | PANTHER | C3HC4-TYPE RING ZINC FINGER PROTEIN | 1 | 42 | - | - | |
| Mtr1g0648 | 378 | SUPERFAMILY | RING/U-box | 217 | 278 | - | - | |
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 357 | 371 | - | - | |
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
| Mtr1g0648 | 378 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr1g0648 | Mtr-Chr1 | 7314449 | 7318351 | Dispersed/Wgd |
Event-related genes