LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g0630	ATGCCATTCAAGAGTATTGTAAAAGAGCTCAAGGAGATGAAAGAGGGAATTGGCAACATGTATAGAAGAGGTGTAGAAACTAAGCATATGCATAGACATGGAAAATCTCACATAGCACCAGAATGTTCTTCACCAATATCACTATCAGTACCAACAACACCATCATCGCTGTCATCATCATCATCATCATCATCATCACAGAGTCAATGGGCTAATTTACCTCCCGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCTCTTGGCCATCTCGCCGTGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTATGGAGAGACATAACAAAGGGTGTTGTGAAGACACTTGAACAGTGTGGTTGGATCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGACAATCCAATTCAGTGTTTTATTAAGAGGGAAAGGGCTACTTCTACATATAGTTTATATCTTGGTCTAAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCAGCAAAGAAGATTAGAAGAGCAACATGCACAGAATTTTTAATATCATTGGTTTCTGATGATTTCTCTAGAGCTAACAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGCACCAAGTTCACAATCTTAGATGGTCATCCTCCACATGTGTCTTCGCTTCCATCGAGTTGCAAGTTGCAACAAAAGGTTCATATGAAGCAAGTACTTCCAAGGGCTGCTCCTGCTCCTGCTAACTATAAAGTAGCAACTGTATCTTATGAACTCAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGAGTACAATGCACTTAATCCCCATATCTTCAGTCCAAGAAGGAGGAACTGCTCCTACTCCTATGGAATTTACCAATTGCCACAATGAGCATGAATCTGCAAAAGAAAAGAAGCCAGAAGTTGTTGAATTTGGCTCAACTTACACTGATTTTGCAAGAGAGCCACTGATTTTGAAAAACAAAGCACCAAGATGGCATGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGGGTTACGGTGGCTTCGGTGAAGAATTTTCAGCTTGTAGCAGCTGCAGAACCTAGCCAAAACGTTTCGGCTGCAGAACAAGAAAAAGTTATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGACTATCGATATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA	1269	0.4113	MPFKSIVKELKEMKEGIGNMYRRGVETKHMHRHGKSHIAPECSSPISLSVPTTPSSLSSSSSSSSSQSQWANLPPELLLDIIQRVEASETSWPSRRALVACASVCRLWRDITKGVVKTLEQCGWITFPISLKQPGPRDNPIQCFIKRERATSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSDDFSRANNTYIGKLRSNFLGTKFTILDGHPPHVSSLPSSCKLQQKVHMKQVLPRAAPAPANYKVATVSYELNVLRTRGPRRMRSTMHLIPISSVQEGGTAPTPMEFTNCHNEHESAKEKKPEVVEFGSTYTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g0630	422	Pfam	F-box domain	70	116	IPR001810	GO:0005515
	Mtr1g0630	422	SUPERFAMILY	Tubby C-terminal domain-like	120	422	IPR025659	-
	Mtr1g0630	422	Gene3D	-	63	115	-	-
	Mtr1g0630	422	MobiDBLite	consensus disorder prediction	42	68	-	-
	Mtr1g0630	422	SUPERFAMILY	F-box domain	56	113	IPR036047	GO:0005515
	Mtr1g0630	422	Pfam	Tub family	131	417	IPR000007	-
	Mtr1g0630	422	ProSitePatterns	Tub family signature 1.	350	363	IPR018066	-
	Mtr1g0630	422	ProSitePatterns	Tub family signature 2.	407	422	IPR018066	-
	Mtr1g0630	422	Gene3D	Tubby Protein; Chain A	128	422	IPR025659	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	186	202	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	202	226	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	253	280	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	332	349	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	350	366	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	379	398	IPR000007	-
	Mtr1g0630	422	PRINTS	Tubby superfamily signature	400	422	IPR000007	-
	Mtr1g0630	422	MobiDBLite	consensus disorder prediction	27	68	-	-
	Mtr1g0630	422	PANTHER	TUBBY-LIKE F-BOX PROTEIN	1	422	-	-
	Mtr1g0630	422	PANTHER	TUBBY-RELATED	1	422	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g0630	Mtr-Chr1	7158880	7161851	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Mtr1g0630		Tub	3.9e-104	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g0630	1	7158880	7161851	Mtr1g0630	1	7158880	7161851	ECH