Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0578 ATGGGTTGGCTTAGTAGAATTTTTAAAGGGTCTGATCATAAGGTTTCTGAAGGGCATTACTATAAAGACGATTCGAGTTATTACTTGCCATCAACTTCAGGGGATGTTTGGACTGAGAACGAGAATGAAGATATCGATCGTGCGATTGCGTTGTCTTTGGTAGAAGAAAATCAGAAAGTGAAAAATGTAAAAGACCACAAATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCAATAGAAGAAAGTCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAATATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATATGCGCTGGCTGCAATACTGAGATTGGTTATGGCCGCTATCTAAACTGCTTGGGTGCATTCTGGCATCCTGAATGCTTTCGTTGTCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTTCCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTCATTACGGTCTTATGGGAGCCATACCTTATGAGTATAACCACGCCAAATGCTAATTTAGATACTAGTAATAGTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAACACTGCCCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACGGGATATATTGCCCATAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTCGATTCTGCTATCATGGATACTAATGAATGTCAGCCCCTTCATGCTGATATACTGAAGTTCTATGAAAGCATAAATATGAAACTGAATCAGCAAGTTCCTCTACTTTTGGTTGAAAGACAAGCACTGAATGAAGCGAGGGAGGGGGAAAAGAATGGCCACTATCATATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTTTTTCAAGACGACCTAGACTCGGCACAGGAAATAGAGACACGAGAGCACAGCCATACAAACTGACTGCACGCTGTGATGTGACTGCAATTCTCATTCTATACGGCCTTCCAAGATTACTTACCGGATCGATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTAACAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCACCAGGCAGCAACTTTGCATCAGCCTCATCCTCATCTGCATCATATACATCTAAGACAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGAGCTGGTCAAAAAGCAGTTCGCAAGTATGGCCTAGAAAGGACCCTTCACCATATCAAGGTGACGGGTAGTTTCCCATATTAA 1482 0.4325 MGWLSRIFKGSDHKVSEGHYYKDDSSYYLPSTSGDVWTENENEDIDRAIALSLVEENQKVKNVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESYHPKCDVCKHFITVLWEPYLMSITTPNANLDTSNSIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQGTGYIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLNQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTFSRRPRLGTGNRDTRAQPYKLTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSAPGSNFASASSSSASYTSKTGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLERTLHHIKVTGSFPY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0578 493 Coils Coil 53 83 - -
Mtr1g0578 493 Pfam LIM domain 111 163 IPR001781 -
Mtr1g0578 493 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Mtr1g0578 493 ProSitePatterns LIM zinc-binding domain signature. 111 145 IPR001781 -
Mtr1g0578 493 Gene3D Cysteine Rich Protein 106 183 - -
Mtr1g0578 493 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 136 - -
Mtr1g0578 493 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Mtr1g0578 493 CDD LIM_DA1 111 163 - -
Mtr1g0578 493 SMART uim 71 90 IPR003903 -
Mtr1g0578 493 SMART uim 40 59 IPR003903 -
Mtr1g0578 493 Pfam Protein DA1 285 487 IPR022087 -
Mtr1g0578 493 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Mtr1g0578 493 PANTHER PROTEIN DA1-LIKE 200 493 - -
Mtr1g0578 493 PANTHER PROTEIN DA1-LIKE 1 179 - -
Mtr1g0578 493 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 185 - -
Mtr1g0578 493 SMART lim_4 110 162 IPR001781 -
Mtr1g0578 493 PANTHER PROTEIN DA1-RELATED 2 200 493 IPR045218 -
Mtr1g0578 493 PANTHER PROTEIN DA1-RELATED 2 1 179 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0578 Mtr-Chr1 6674309 6679384 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr1g0578 DA1-like 1.3e-90 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0578 1 6674309 6679384 Mtr1g0578 1 6674309 6679384 ECH