Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0563 ATGTTTGGCAGCAGCAGAAATAGCAGCAGCAATGGCAGCAGCAACAACAACAATAACATTCCTCGTCCACAGTTTATGCAATCCGAACCCCGATTTTCCACAACAGAAGCCTATACTGACGATGACTATGCCATGCGTAGCAGCAGCGCCGCCTCCCCCATGAGCCCTTACTACTACGACCCTGGAAGATTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCTCAAAGCCACAATGGTCACAACATGAAGACACGCCTCCACAGAATTCACTAATTGGTTCACTGGTCCGCGAAGAGGGTCACATTTATTCTTTAGCCGCATCCGGTGACTTATTATACACCGGCTCAGACAGCAAGAACATTCGTGTGTGGAAGAATCTTCAAGAATATTGCGGATTCAAATCCAACAGTGGACTGGTGAAAGCAATCATAATATCCGGTCAAAAGATCTTCACTGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTCTCTCTCAAGAACCCTAGCGTTCACAAACGTGCTGGAACATTACCAACACTCAAAGACATCTTCAAAAGCTCAATTAAACCAAGCAATTATGTCGAGGTTAGAAAACACCGAACTGCATTATGGATCAAACATTCGGATGCAGTTTCATGCCTAAGTCTTTCTCCAGACAAAACCTACCTCTACTCTGCTTCATGGGACAGAACCGTCAAAGTTTGGAGAATCGCCGATTCAAAGTGCTTGGAATCCATTACTTCCCATGAGGATGCAGTTAACGCCGTCGTTTGTGGAAACGACGGAATTGTTTTCTCTGGTTCAGCAGACGGAACAGTTAAAGTGTGGCGAAGAGAACCACGTGGTAAAGCAACAAAACATGTAATGGTTAAACAACTTTTAAAACAAGAATGTGCAGTAACTGCTTTAGCAATTGACAGCACAGGTTCAATGGTTTATTGTGGTGCTTCTGATGGATTGGTTAACTTTTGGGAACGTGATAAGCAATTTGAACATGGTGGAGTCCTCAAGGGTCATAAGCTTGCAGTTTTGTGTTTAGCTTCTGCTGGGAATTTGGTTTTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGACGGTGTTATTCACACGTGTATGTCTGTTTTAACGGGACATGATGGTCCCGTTAAATGTTTAGCAGTGGAGCAGGATCGCGAATCTGATGCTAGAGGCGATCAACGGTGGATATTGTATAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTATGCAGGTACAGCACCGTATGACTTCTATGACTTCTGAAGGGGACTCGATACCTTCGGAATCCGATAGCAGTTACTCCTCAAGTCGGCCCAGTCTTAATAAGAGAAACTAA 1413 0.4395 MFGSSRNSSSNGSSNNNNNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYYYDPGRLSGEGSPMMMSPWNQTTNSPFSKPQWSQHEDTPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTVKVWRIADSKCLESITSHEDAVNAVVCGNDGIVFSGSADGTVKVWRREPRGKATKHVMVKQLLKQECAVTALAIDSTGSMVYCGASDGLVNFWERDKQFEHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEQDRESDARGDQRWILYSGSLDKSVKVWSVSESMQVQHRMTSMTSEGDSIPSESDSSYSSSRPSLNKRN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 377 IPR001680 GO:0005515
Mtr1g0563 470 MobiDBLite consensus disorder prediction 1 52 - -
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 287 IPR001680 GO:0005515
Mtr1g0563 470 SUPERFAMILY WD40 repeat-like 102 440 IPR036322 GO:0005515
Mtr1g0563 470 Pfam WD domain, G-beta repeat 344 377 IPR001680 GO:0005515
Mtr1g0563 470 Pfam WD domain, G-beta repeat 218 246 IPR001680 GO:0005515
Mtr1g0563 470 Pfam WD domain, G-beta repeat 109 135 IPR001680 GO:0005515
Mtr1g0563 470 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Mtr1g0563 470 Pfam WD domain, G-beta repeat 384 430 IPR001680 GO:0005515
Mtr1g0563 470 MobiDBLite consensus disorder prediction 71 97 - -
Mtr1g0563 470 Gene3D - 76 198 IPR015943 GO:0005515
Mtr1g0563 470 SMART WD40_4 136 173 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 340 377 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 250 288 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 382 430 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 208 247 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 297 336 IPR001680 GO:0005515
Mtr1g0563 470 SMART WD40_4 98 135 IPR001680 GO:0005515
Mtr1g0563 470 Gene3D - 200 296 IPR015943 GO:0005515
Mtr1g0563 470 PANTHER PROTEIN JINGUBANG 23 451 - -
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 439 IPR001680 GO:0005515
Mtr1g0563 470 Gene3D - 297 457 IPR015943 GO:0005515
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 287 - -
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Mtr1g0563 470 MobiDBLite consensus disorder prediction 439 470 - -
Mtr1g0563 470 MobiDBLite consensus disorder prediction 69 97 - -
Mtr1g0563 470 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Mtr1g0563 470 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Mtr1g0563 470 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Mtr1g0563 470 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 23 451 IPR045182 -
Mtr1g0563 470 CDD WD40 109 430 - -
Mtr1g0563 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0563 Mtr-Chr1 6542184 6544428 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0563 1 6542184 6544428 Mtr1g0563 1 6542184 6544428 ECH
Mtr3g3132 3 45266582 45270716 Mtr1g0563 1 6542184 6544428 PCT