Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0550 ATGGAAGGAACACAAAACTGTGTTGGAAGCACCAAATCATTGGAGGAACTCATTTATTGGACCCATTTTCAGTTCATCCATTTCACCCTTTTTCTGAGCATCACCGATTTTCACCATCAACTTGCACTTCCGAAAACATTTTCAGACAATTTAAAGAAGAAGTTACCAGAAAATGTGACCATTAAATGTCCTAGCGGAATTGTGTGGAATATAGGGCTGACAGCTAGAGGTGATACTGTTTACTTCACGAACAGTTGGCAACAATTCGTCAAAGACCACTCCTTGAAGGAAAATGATTTCCTTGTATTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTAATGGAAATAGTTTCTGTGAGAAGGCAGCGTCATATTTTGTTCAAAAATGTGGACAAGCTCATAGTCCTTCTAGTGGCGGTGTTGAAGACATTTACTGGAGCTATTTCAAATTCACACATTTCACCCTATTGGTTCACACCAATTTTGAACGACATCTTGCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTACATGGAATATAAGGCTGACAACTAGAGATGGCTTTGTTTACTTCGTGGACGGTTGGCAACAATTCATGAACGATCACTCGTTGAAAGCTAATGATTTCCTTGTCTGTAAGTACAATGGTGAATCACACTTCGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGAAGCTTCTTATTTTGTCGAAAAATGCGGCCATGCTCAAACAGCACAAGGGGGTAGCAATGCATCGGAAACAAACAATTCTATTGAAGAAGTCGATACTGATTCTAATGGTGGTGATTCTCCTGAGCAGTTCACGGATGATGCAGTCCCTAAGACCACAGCTATTCAGTCTCCCTTCATACCAACTGGAAAAAGAACCAAGAGGAGAAGAAGATCACCAAAAGCTGCTGCTAATTGGGGTGCGAGAGCACATGCTTGGGTGACTTGTAACAAGCAACACCCAGAGGCAGCCAGCCCGCATAGAAGTGGGAAGGTAGACGACCATTGTATTCTCAGCGGAGCTTCACTGTCAAAGTCAACAGCACTTATTGAGGAAAAGATAGCCCAGTCATTTTCCTCCTCATTTCCATATTTTGTTAAAATAATTAAAGCCTTCAATGTCAGTGGTTCTCGTACTATTAATATGCCCTATCAATTTTCGACGGCGCATCTTCCAAACAGCGATACACCGATTTTTCTTCAAAATTTGAAGGGAGAACACTGGCTTGTTAATTCTGTTACTAAAACTAAAATACATACAAGTCACTCTCTATGTGGAGGATGGATGGATTTTGTTCGTGGCAATAGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACAAGAGTGTGAATTTCGTGTTCGCATCATCGCTGAGGTTGGAAAAGATGGGCTAGTACTCCCTCGTTGA 1488 0.4039 MEGTQNCVGSTKSLEELIYWTHFQFIHFTLFLSITDFHHQLALPKTFSDNLKKKLPENVTIKCPSGIVWNIGLTARGDTVYFTNSWQQFVKDHSLKENDFLVFKYNGESHFEVLIFNGNSFCEKAASYFVQKCGQAHSPSSGGVEDIYWSYFKFTHFTLLVHTNFERHLALPKTFSDNLNKKLPENVTLKGPSGVTWNIRLTTRDGFVYFVDGWQQFMNDHSLKANDFLVCKYNGESHFEVLIFDGESFCEKEASYFVEKCGHAQTAQGGSNASETNNSIEEVDTDSNGGDSPEQFTDDAVPKTTAIQSPFIPTGKRTKRRRRSPKAAANWGARAHAWVTCNKQHPEAASPHRSGKVDDHCILSGASLSKSTALIEEKIAQSFSSSFPYFVKIIKAFNVSGSRTINMPYQFSTAHLPNSDTPIFLQNLKGEHWLVNSVTKTKIHTSHSLCGGWMDFVRGNSIKVGDVCIFELIQECEFRVRIIAEVGKDGLVLPR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0550 495 Pfam B3 DNA binding domain 164 245 IPR003340 GO:0003677
Mtr1g0550 495 Pfam B3 DNA binding domain 390 483 IPR003340 GO:0003677
Mtr1g0550 495 Pfam B3 DNA binding domain 37 117 IPR003340 GO:0003677
Mtr1g0550 495 CDD B3_DNA 388 483 IPR003340 GO:0003677
Mtr1g0550 495 ProSiteProfiles B3 DNA-binding domain profile. 390 486 IPR003340 GO:0003677
Mtr1g0550 495 MobiDBLite consensus disorder prediction 266 312 - -
Mtr1g0550 495 ProSiteProfiles B3 DNA-binding domain profile. 154 247 IPR003340 GO:0003677
Mtr1g0550 495 SUPERFAMILY DNA-binding pseudobarrel domain 156 245 IPR015300 -
Mtr1g0550 495 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Mtr1g0550 495 MobiDBLite consensus disorder prediction 266 331 - -
Mtr1g0550 495 SUPERFAMILY DNA-binding pseudobarrel domain 385 482 IPR015300 -
Mtr1g0550 495 CDD B3_DNA 27 117 IPR003340 GO:0003677
Mtr1g0550 495 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 11 137 - -
Mtr1g0550 495 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 145 486 - -
Mtr1g0550 495 SMART B3_2 154 247 IPR003340 GO:0003677
Mtr1g0550 495 SMART B3_2 390 486 IPR003340 GO:0003677
Mtr1g0550 495 SMART B3_2 27 119 IPR003340 GO:0003677
Mtr1g0550 495 CDD B3_DNA 162 245 IPR003340 GO:0003677
Mtr1g0550 495 Gene3D - 151 250 IPR015300 -
Mtr1g0550 495 Gene3D - 21 122 IPR015300 -
Mtr1g0550 495 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 137 IPR044837 -
Mtr1g0550 495 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 145 486 IPR044837 -
Mtr1g0550 495 Gene3D - 370 486 IPR015300 -
Mtr1g0550 495 SUPERFAMILY DNA-binding pseudobarrel domain 23 118 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0550 Mtr-Chr1 6403911 6408443 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g0550 B3 3.2e-12 CL0405