Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0539 ATGCAAAGAAGCTTGAGAAATGGAAGTAAAGGTGGAAAATCCTCAACCATAGAAAGAAAGTTGGCATTGCAACAAGATGTGGATAAATTGAAGAAGAAGCTTAAGCATGAGGAGAACATTCGCAAGGCATTAGAGAGAGCTTTCAATAGACCTTTAGGAGCTTTACCTCGACTTCCTCCTTACCTACCTCCTTATATACTAGCACTTCTAGCTGAAGTGGCAGTTTTGGAAGAGGAAATTGTTTGGCTTGAAGAGAAAGTTGTGCATTTCAGGCAGGATTTGTATCATGAAGCTGTCTATTTGTCATCTTCTAAGACCAAATTGGAGCATTTATCACCTCTTCCAAACAATTCAAACACAGCATCAACAATGAACAGTCCTAAATTGGATGAATTGAAGTCTCTTTCACAAACAGTTGATGATAATCCAGCAGCAACGTCGACAACTAGGCCTACCATACCACTCCAAGATAATGGACAAGGAAAAGAGAATCGATCCGGCACTAATTCTTTCAAGAGCAGGCTGCAACCCTCCAAGCAAATGAGTAGAAGTCCAATAAAAAATCTTCATGTTGACAATAAGTCATCATTGCATAAAAAGTCGCATTCTCCGAAAAGGAAGCAACAACCAAGGGTAAAAGAACAGAAAATTGCAGAATTAAGACAACCTAGTCCACACCAAATGTCAACAGAAGCTGACTGTCCAAATGTGATTTCGGAAAATATTCTGAAGTGCTTATCAAGCATTCTCTTGAGAATGAGTTCAGTGAAGTATCCAGGTTCTGCAGGCGACATATCTTCGCCCTTATGGGCTCTAAAGCCTCAAAACCGTGTTGAAGGAACAGAGTTTTGGGACCCGTATGGCATCTGTCTGGAATTTGGAAGGAGGGATATTGGTCCCTACAAGCATTTATGTGCAATTGATGCTAAATCTTTCAATGCAAAACGAACCGGAAATACTTTGTTTTTACTGCACCGGTTGAAACTTCTTTTTAGGAAGCTAACTTCTGTCAACTTGGAAAACCTCAATCATCAAGAGAAGCTTGCATTTTGGATCAACACGTATAACTCGTGTATGATGAATGAATTCATAGAGAATGGCATACCGGATAATCCTGAAATGGCTGTCGCAATGATGCGGAAGGCAAAAATAAATGTTGGTGGACACATACTAAGTGCAACAACCATAGAGCATTTCATTTTAAGACTTCCTCATCACTACAAATTTACGATTTCCAAGGGAGCGAAAAATCATGATATGATAGCAAGAAGCATATATGGATTGGAACTCTCAGAACCTCTAGTTACATTTGCTCTCTCTTGTGGAACTTGGTCGTCTCCTGCTGTGAGAGTTTACACAGCATCTCAAGTGGAGAATGAACTGGAAGTGGCCAAAAGAGAGTACTTACAAGCAACAGTTGGAATTTCAACGTCCAAGTTTGCGATCCCAAAGCTTTTGGATTGGTATTTACAGAACTTCGCAAAAGACTTAGAATCACTGATGGATTGGATCTGCCTTCAGTTACCAAGTGAACTGGGAAAAGAAGCCATTAAATTGCTTGAGGAAAGAAAAAATGAGCCCCTCTCACAATTTGTACAAATCATGCCATATGATTTCAGCTTTAGATACTTGTTTTGCACATAA 1644 0.3972 MQRSLRNGSKGGKSSTIERKLALQQDVDKLKKKLKHEENIRKALERAFNRPLGALPRLPPYLPPYILALLAEVAVLEEEIVWLEEKVVHFRQDLYHEAVYLSSSKTKLEHLSPLPNNSNTASTMNSPKLDELKSLSQTVDDNPAATSTTRPTIPLQDNGQGKENRSGTNSFKSRLQPSKQMSRSPIKNLHVDNKSSLHKKSHSPKRKQQPRVKEQKIAELRQPSPHQMSTEADCPNVISENILKCLSSILLRMSSVKYPGSAGDISSPLWALKPQNRVEGTEFWDPYGICLEFGRRDIGPYKHLCAIDAKSFNAKRTGNTLFLLHRLKLLFRKLTSVNLENLNHQEKLAFWINTYNSCMMNEFIENGIPDNPEMAVAMMRKAKINVGGHILSATTIEHFILRLPHHYKFTISKGAKNHDMIARSIYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREYLQATVGISTSKFAIPKLLDWYLQNFAKDLESLMDWICLQLPSELGKEAIKLLEERKNEPLSQFVQIMPYDFSFRYLFCT* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0539 547 PANTHER EXPRESSED PROTEIN 2 545 - -
Mtr1g0539 547 Pfam Leucine-zipper of ternary complex factor MIP1 18 97 IPR025757 -
Mtr1g0539 547 Coils Coil 20 47 - -
Mtr1g0539 547 MobiDBLite consensus disorder prediction 140 214 - -
Mtr1g0539 547 Coils Coil 66 86 - -
Mtr1g0539 547 MobiDBLite consensus disorder prediction 140 191 - -
Mtr1g0539 547 PANTHER TRANSCRIPTION FACTOR 2 545 - -
Mtr1g0539 547 Pfam Protein of unknown function, DUF547 340 469 IPR006869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0539 Mtr-Chr1 6285625 6288926 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0539 1 6285625 6288926 Mtr1g0539 1 6285625 6288926 ECH
Mtr1g0539 1 6285625 6288926 Mtr3g3623 3 50091248 50095180 PCT