Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0534 ATGCAACAAACCAACGGTTCAGATTCATCATCGCCGTCCGAGACGACGACGAACAAACAACAACGACAACAACCACCGGCACCGGTGGCGGTACCACAACAGTGGATTCCGATGCAGTATCCAACAGCGGCGATGGTAATGCCACATCACATGATGCCACCACAACATTACGCGCCGCCTCCATATGTTCCTTATCACCACCATCACCATCAGTTTCAGCAACCGTTGCACGTGCCACCACATCAGCATCAGAATCATCAGAATCAGCATGGATCCAATGGAGAGAATAAGACTTTGTGGATTGGTGATTTGCATAGCTGGATGGATGAGAGTTATCTTCATCGCTGTTTTGCTTCTACTGGAGAGATTACCTCCGTCAAGGTTATTCGCAATAAACACAGTGGTATTTCAGAGGGTTATGGATTTGCGGAGTTCTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAGCTTTCCGTTTGAACTGGGCAACATTTAGCACAGGAGACAAGGGATCGGATAATGTTACTGATCTGTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTTCTAGTTCATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTTGGAGATGAAAGCGAGAGATCTCAGGCTATGACTCAAATGAACGGTGTTTACTGTTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACCAGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACAATATTTGTTGGAGGACTCGACTCTAATGTTACAGATGAAGATCTTAAGCAGACGTTCTCTCAGTATGGTGAGATAGCATCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAACGGGACAATGATTGGTAAGCAAACTGTTCGTCTCTCTTGGGGCCGCAATCCAGCATATAAACAGTTTAGGCTTGACGTTGGAAGCTGGGCCGGGCCATATTTTCCATCCCCTATTTATGATGGATATGGATATGCAATGCCTTCTCCTCATCATGACCCAAGTATGTATCCTCTAGCTTATGGGGGTTACCCTATTTATGGAGGCCACTCACAACAAGTAAGCTGA 1278 0.4468 MQQTNGSDSSSPSETTTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPPPYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLDVGSWAGPYFPSPIYDGYGYAMPSPHHDPSMYPLAYGGYPIYGGHSQQVS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0534 425 MobiDBLite consensus disorder prediction 265 291 - -
Mtr1g0534 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 424 - -
Mtr1g0534 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 163 IPR000504 GO:0003723
Mtr1g0534 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Mtr1g0534 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Mtr1g0534 425 Gene3D - 189 265 IPR012677 -
Mtr1g0534 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Mtr1g0534 425 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 424 - -
Mtr1g0534 425 MobiDBLite consensus disorder prediction 1 28 - -
Mtr1g0534 425 MobiDBLite consensus disorder prediction 273 291 - -
Mtr1g0534 425 SUPERFAMILY RNA-binding domain, RBD 65 178 IPR035979 GO:0003676
Mtr1g0534 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Mtr1g0534 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Mtr1g0534 425 SUPERFAMILY RNA-binding domain, RBD 191 369 IPR035979 GO:0003676
Mtr1g0534 425 CDD RRM2_SECp43_like 189 268 - -
Mtr1g0534 425 CDD RRM1_SECp43_like 98 178 - -
Mtr1g0534 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Mtr1g0534 425 SMART rrm1_1 98 173 IPR000504 GO:0003723
Mtr1g0534 425 SMART rrm1_1 191 265 IPR000504 GO:0003723
Mtr1g0534 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Mtr1g0534 425 Gene3D - 63 188 IPR012677 -
Mtr1g0534 425 MobiDBLite consensus disorder prediction 1 34 - -
Mtr1g0534 425 Gene3D - 272 372 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0534 Mtr-Chr1 6228862 6233357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0534 99 375 Eukaryotic Initiation Factors Gene Family AT2G23350 27.660 3.43e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0534 1 6228862 6233357 Mtr1g0534 1 6228862 6233357 ECH
Mtr1g0534 1 6228862 6233357 Mtr3g3625 3 50111369 50115213 PCT