Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0503 ATGGACGGTTACGATGGAACCGTTCGTCTCGGAGCTCTTAACATGAAGTATGATCGCGGTGACTTTGACTCCGGCACCGATGTATCGGTTTCTTCTCCGGTAACGAAACAGAAAGCCGCTGCTGCTAAACAATTCATCGAGAATCATTATAAGAATTATCTTCAAGGATTGCAGGATCGCAAAGATAGGCGCAGAGCGCTACAAAGGAAAGTGCAGGAATCTCAATTACCAGCGGAAGAGCAGGAGGTGATGATGAGAAATTTGGAGCGTAAAGAAACCGAGTACATGAGGCTTCAGAGACGTAAAATTGGAATTGATGATTTCGAGCAATTAACAGTAATTGGAAAAGGTGCTTTCGGCGAGGTGAGGTTATGTCGTGCTAAAAGTACTGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTCGAACATGTACGATCTGAAAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCGTTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAACATGTTGCTCGCTTCTACATTGCCGAAAGTATTCTTGCTATCCACTCAATACATCAGCACAACTATGTACATAGGGATATAAAACCTGATAACCTTATACTGGATAAAAATGGTCATTTGAAGCTTTCAGACTTCGGCTTATGCAAGACTCTTGATGACAAGTATTCAACAATTTTATTGGAAAATGATGATTTCAACGGTCAAGAATCAACTAGTGAAACTGAATATAATTTTGTCTCCCCTTGGTTGATGCCAAAGGAACAATTACAGGCATGGAAGCGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGATTACATGGCCCCTGAAGTTTTGCTCAAGAAGGGGTATGGAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCTTGTATGAGATGCTTGTTGGATATCCTCCATTTTGTTCTGATGATCCAAGGATGACCTGCCGTAAGATTGTGAACTGGAAAACATGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTCATCTGTCGTTTACTATGTGATGTTGACACAAGACTAGGAACAAGAGGAGTAGACGAAATAAAGGCTCATCCATGGTTCAGGGGTGTTCAATGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCATTGGAGACTTGGACACACAGAACTTTGAAAAGTTTCCTGATGTAGGCCCACCATCCGTAACAGAAACTGTGGGACCATGGAGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATATACATTTAAGAAATCAGACATCCTTAAATCGATTGAAAGTACAGATGAAGATATCAGAGTAAACGGGTCATCAAAATCTCCTTCCTTGATTTCCCTGTTAGGGAGAATTGATTTGCAAGATACTGCCATTCCAGAAAGTGAACCGAAGCCAGAAACTTGA 1563 0.4107 MDGYDGTVRLGALNMKYDRGDFDSGTDVSVSSPVTKQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQLPAEEQEVMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEHVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKTLDDKYSTILLENDDFNGQESTSETEYNFVSPWLMPKEQLQAWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAILYEMLVGYPPFCSDDPRMTCRKIVNWKTCLKFPEEPKISAEAKDLICRLLCDVDTRLGTRGVDEIKAHPWFRGVQWDMLYELEAAYKPTVIGDLDTQNFEKFPDVGPPSVTETVGPWRKMLTSKDTNFIGYTFKKSDILKSIESTDEDIRVNGSSKSPSLISLLGRIDLQDTAIPESEPKPET* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0503 520 SMART pkinase_C_6 409 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Mtr1g0503 520 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Mtr1g0503 520 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Mtr1g0503 520 Coils Coil 81 101 - -
Mtr1g0503 520 CDD STKc_NDR_like 106 471 - -
Mtr1g0503 520 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0503 520 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 505 - -
Mtr1g0503 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Mtr1g0503 520 Pfam Protein kinase C terminal domain 429 470 IPR017892 GO:0004674|GO:0005524|GO:0006468
Mtr1g0503 520 Gene3D Phosphorylase Kinase; domain 1 69 191 - -
Mtr1g0503 520 Gene3D Transferase(Phosphotransferase) domain 1 307 426 - -
Mtr1g0503 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 505 - -
Mtr1g0503 520 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0503 520 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr1g0503 520 Gene3D Phosphorylase Kinase; domain 1 427 437 - -
Mtr1g0503 520 SUPERFAMILY Protein kinase-like (PK-like) 83 457 IPR011009 -
Mtr1g0503 520 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0503 Mtr-Chr1 5870023 5874780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0503 1 508 AGC Kinase Gene Family AT5G09890 78.711 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Mtr1g0503 Pkinase 3.9e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0503 1 5870023 5874780 Mtr1g0503 1 5870023 5874780 ECH