Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0499 ATGGCTTTCCTTCAAGACCAATTTCAACGCCACTACCAACAACAACAACAACCTCAACCACAAACCAAATCGTTCAGAAATTTACAAACAATTGAAGGTCAGATGTCGCAGCAGATGGCTTTTTACAACCCTACTGATTTGCAGGATCAGTCTCAGCATCCACCTTACATTCCTCCATTTCATGTAGTTGGTTTTGCTCCGGGTCCTGTCATTCCGGCTGATGGAAGTGATGGTGGTGTTGATTTGCATTGGAATTTCGGTTTGGAACCCGAGAGAAAAAGACTAAAAGAACAGGATTTTTTGGAGAATAATTCTCAGATATCTTCTGTGGATTTCTTGCAACCTCGATCTGTGTCCACAGGGTTAGGATTGTCGCTTGATAACACTCGCCTGGCTTCAACCGGAGACTCGGCTTTATTGTCTCTCATAGGGGATGACATTGATCGCGAGTTACAGCAGCAGGATTTAGAGATGGACAGATTTCTCAAACTGCAGGGTGAACAATTGCGGCAAACAATTTTAGAGAAAGTTCAGGCAACACAACTTCAAAGTGTTTCAATCATTGAAGACAAGGTCCTCCAAAAACTTCGCGAGAAAGAAACGGAGGTAGAAAACATCAACAAGAGGAATATGGAACTTGAAGATCAAATGGAGCAACTAAGTGTAGAAGCAGGTGCATGGCAACAACGAGCAAGATATAACGAAAACATGATTGCTGCTCTCAAGTTTAACCTCCAGCAGGCATATCTCCAAGGTAGGGACAGTAAAGAAGGGTGCGGTGACAGTGAGGTAGATGATACAGCTTCTTGCTGTAATGGTCGTTCACTTGATTTTCATCTGCTCTCCAATGAAAATTCCAATATGAAAGACTTGATGAAATGTAAGGCTTGCAGAGTCAACGAAGTGACAATGGTTTTATTACCTTGCAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTCATCGGAATGGAGGTCTACATGTAA 1023 0.4194 MAFLQDQFQRHYQQQQQPQPQTKSFRNLQTIEGQMSQQMAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVIPADGSDGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLASTGDSALLSLIGDDIDRELQQQDLEMDRFLKLQGEQLRQTILEKVQATQLQSVSIIEDKVLQKLREKETEVENINKRNMELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQAYLQGRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMKDLMKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0499 340 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Mtr1g0499 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 7 340 IPR017066 -
Mtr1g0499 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 330 - -
Mtr1g0499 340 Coils Coil 189 230 - -
Mtr1g0499 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 340 IPR013083 -
Mtr1g0499 340 PANTHER F2G19.2 7 340 - -
Mtr1g0499 340 PIRSF SBP1_RNase_bind 5 340 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0499 Mtr-Chr1 5817805 5820357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0499 294 330 Miscellaneous Gene Families AT4G39050 45.946 3.13e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0499 1 5817805 5820357 Mtr1g0499 1 5817805 5820357 ECH