Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0498 ATGGCTGGTTCTTCTGATGATGATATACACCAAACACACCCATCACTTGTTCCTCCTGATTCTCAAGACTTCTCCAATATATTCAACCAACTCATGGATCCATCTTCTTCATCATCTTTCAATTTTTCTGATCCCTATCCTCCTAATCCTTCCACCATCTCTTACCCTCCTCCTCATTTCACTTCTTCCTCTTCTGCTCAGAATGATGAAGGTTCAGAGTTGCCATCATCAAAGGCTGCCCCACCACCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCCTTACAAAATTTAATTCCAAATTCTAACAAGACAGATAAAGCTTCAATGTTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTATAGCTTGCATCCGATGTCTTTATCAGGAGGATCGCGACCTCCTACGATGTTTCCTCAGACTGAGTTGTTCAATCTTGATGAGGGTAATAGTGGGTTTCACAATTCTAACAATGCAATTACCCCGCCTACTAACAATGAATATTTCGCACGGCAAGCTTTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTATCTTACCCTCGTCGACCAATATAGCTTCATTTGATACCTCATCAAGTTTTCAAACCTCTATTAAGGATAATTTCTGCAACAACATGCCACAACTGATTTTGGATACAACAAGGATTGGAAAAACTCCTTCTTCAGATGTTTCTTAA 804 0.3918 MAGSSDDDIHQTHPSLVPPDSQDFSNIFNQLMDPSSSSSFNFSDPYPPNPSTISYPPPHFTSSSSAQNDEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGSRPPTMFPQTELFNLDEGNSGFHNSNNAITPPTNNEYFARQAFSFPEQCSISNQSVILPSSTNIASFDTSSSFQTSIKDNFCNNMPQLILDTTRIGKTPSSDVS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0498 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Mtr1g0498 267 MobiDBLite consensus disorder prediction 1 105 - -
Mtr1g0498 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 151 IPR036638 GO:0046983
Mtr1g0498 267 SMART finulus 97 146 IPR011598 GO:0046983
Mtr1g0498 267 MobiDBLite consensus disorder prediction 56 84 - -
Mtr1g0498 267 CDD bHLH_AtPIF_like 91 153 - -
Mtr1g0498 267 PANTHER TRANSCRIPTION FACTOR SPATULA 65 243 - -
Mtr1g0498 267 MobiDBLite consensus disorder prediction 1 48 - -
Mtr1g0498 267 Gene3D - 86 150 IPR036638 GO:0046983
Mtr1g0498 267 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 65 243 IPR031066 -
Mtr1g0498 267 MobiDBLite consensus disorder prediction 89 105 - -
Mtr1g0498 267 Pfam Helix-loop-helix DNA-binding domain 95 141 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0498 Mtr-Chr1 5812676 5815296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0498 91 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 76.829 2.97e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g0498 HLH 1.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0498 1 5812676 5815296 Mtr1g0498 1 5812676 5815296 ECH