Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0497 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTCATCTGAAACCTTCGAGTTTGATTGTGGATCTACATCAAGTACTGCTGCTGTTGATCAGCACATTTTTTGGAATAATATGCACACTCCTGCCGAAAATCGGATACCCGAGTTTATGCTTTCCCCAAGTGAGATGAACCCGCCTCACGGGAATTCTCTAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGAGAACCAAGTTCCAGTAATACACAGAACGAAGTTAACAACAATGAGCTGAAAAGGGAGTTAGGGTTATCACCTCCGATAAATGGTGGTGCTATAGCTGGTCCAAGACTAGAAGAAAGGCACTTTGAACCAACTAGTGCATTTTCATTGGATAACGTCAATACAGGTCCTATGTATATGTGCAGCCCCAATTCTCATTTGGTACCACAAAATCTCAATTTAAATGCCAGTTTAACAGATAATGGCATCGATAATAGCTATCATGTGGAAGTTGAACATCCCAACATGCACAAATCCAGTGGTCCTCTAAATGAGCATATTCCACCTCCGATTACTTCTGGTTCTTTTTTGCTTCCTTCTGGTGGAAGTAACAGCATTTATCTCGGGGATACCGATGGTCGGCCAGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAACGAAAGGCAGTTGAAGGAAATGGTGGACAATCTTCAGACGGTGGAAGTTCTAGCTATAGCCAGCATACAGTTGGCAGTGCTTGGAATACTCTTCCTACTCAGGATTATGCAGGGAGCAATTTTAACCAATCTGCACCGGCAGAACAGGTGAATGCAAGACTTGGCCTGAGTGTCGGGGACGGATCTTCTGAAACCATACCTGGGTCAACTGTTGCAGGAAGCTCGGAAAGCTTCCACAGAAATTTTCGTTTGAGGATAAATCCTTCAAGCCAACAAATTTCTCTTCCTCCAGCCACATTCTCACATGGGAGTGTGATCAGAAACTCTAGTGTTCCTTCATCTGCTCCAATGTTGCAAAGGTACCACCCTATCAATAATCCTCTGGACTTGAGGTCAGTACAACCAGTAAATGTGATGCATCCTCAAAGCGAACCTCTTCTGGTTCATGTTCCTGCGTTACCGAGGAGTGCGCAATCCATCAGGTGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCGTCAAATTCAGTTTTAGGCTTAGATAGGGATACTCAACCACATGAGGAAGCAGGCTCAAGAGCTATGGCTAGAAACATTTTAGATCACCCAGTGTTTGTACCTGCAAATGTAAGAAATGCGGCTCGAAATCCAGCTAGGTCTTCGAGCAGTGCAAACTTAAGTATTCCAGGAAATGTTGCTTCGTCATCAAGAACTGCACCAAATCCTCCAGCTTTGAATCCATCATCTGTCTCGGCGTGGGTTTCTCGTCCTAATCCTCAGCAGTATCCTCGCAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCGGTTCTGAAGGTGGAAGTTCAAGCAATAACTATCCTTCCTTGCGTGGTCCTTCCACTTCGTCAGAATCAAGAAATCTGCCATCTGGGACCAACCCTGGATCATCTCCATGGATGGAGAGGTCAGCTGATAGTGAATTTGGAATTCCCTATTCCTTACGATCGTTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGTGTTGGGCATCATGCGTAGGGGTGGGAACCTGCGGTTTGAGGATGTTATGATTCTCGACCATTCAATGTTTGCTGGGATTGCTGATATGCATGATAGGCACAGGGATATGCGGCTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAACGCATTGGAAATGTCAGCACAGGATTGAATGAGGAGACCATTATGAAACATTTGAAACAGAAGAAATACTCAGTTGATGGATTGGGTTCACAGAGTGAGACAGAACCCTGCTGTGTTTGTCAGGAGGAGTTTAAAAATGAAGATGATATTGGATCATTGGATTGCGGGCATGATTATCACATCGACTGTATTAAACAGTGGCTAACCCATAAGAATATCTGTCCAATTTGTAAGACAACAGGCTTGGCAACATGA 2127 0.4485 MQGQRGTIGSSSETFEFDCGSTSSTAAVDQHIFWNNMHTPAENRIPEFMLSPSEMNPPHGNSLNHEWQNLSGWSLGEPSSSNTQNEVNNNELKRELGLSPPINGGAIAGPRLEERHFEPTSAFSLDNVNTGPMYMCSPNSHLVPQNLNLNASLTDNGIDNSYHVEVEHPNMHKSSGPLNEHIPPPITSGSFLLPSGGSNSIYLGDTDGRPGCSLDTRRVSCKRKAVEGNGGQSSDGGSSSYSQHTVGSAWNTLPTQDYAGSNFNQSAPAEQVNARLGLSVGDGSSETIPGSTVAGSSESFHRNFRLRINPSSQQISLPPATFSHGSVIRNSSVPSSAPMLQRYHPINNPLDLRSVQPVNVMHPQSEPLLVHVPALPRSAQSIRWSGGSSSTNNHSSNSVLGLDRDTQPHEEAGSRAMARNILDHPVFVPANVRNAARNPARSSSSANLSIPGNVASSSRTAPNPPALNPSSVSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEGGSSSNNYPSLRGPSTSSESRNLPSGTNPGSSPWMERSADSEFGIPYSLRSLAAAGEGSSRLVSELRNVLGIMRRGGNLRFEDVMILDHSMFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKQKKYSVDGLGSQSETEPCCVCQEEFKNEDDIGSLDCGHDYHIDCIKQWLTHKNICPICKTTGLAT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0497 708 MobiDBLite consensus disorder prediction 231 246 - -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g0497 708 SUPERFAMILY RING/U-box 660 704 - -
Mtr1g0497 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 381 412 - -
Mtr1g0497 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 496 539 - -
Mtr1g0497 708 SMART ring_2 661 701 IPR001841 -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 168 190 - -
Mtr1g0497 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Mtr1g0497 708 MobiDBLite consensus disorder prediction 499 537 - -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 223 246 - -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 437 481 - -
Mtr1g0497 708 MobiDBLite consensus disorder prediction 381 403 - -
Mtr1g0497 708 CDD RING-H2_TTC3 660 702 - -
Mtr1g0497 708 Pfam Ring finger domain 661 702 IPR001841 -
Mtr1g0497 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0497 Mtr-Chr1 5797836 5804489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0497 1 708 C3H Transcription Factor Family AT2G15530 32.404 6.76e-73 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0497 1 5797836 5804489 Mtr4g2773 4 41431268 41436516 ECH
Mtr1g0497 1 5797836 5804489 Mtr1g0497 1 5797836 5804489 ECH