Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0495 ATGGCGCAGATTCAGGTTCAACATCAAACTCCGGCACCAGTTCCAGCACCTTCGAACGGCGTCGTACCGAACGTTGCGAATCAGTTTGTTACGACGTCTTTGTACGTTGGTGATCTTGAGGTGAATGTGAATGATTCTCAGCTTTACGATCTGTTTAATCAGGTTGGACAAGTGGTTTCGGTTAGGGTTTGTAGGGATTTGGCTACTCGTCGTTCGCTTGGTTATGGTTATGTTAATTTCACTAACCCTCAGGATGCGGCTAGGGCTTTGGATGTTCTGAATTTTACTCCTATGAACAACAAATCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTAGTCGCAAGAGCGGCACTGCTAATATTTTTATCAAGAATTTGGATAAGACAATTGATCACAAAGCTTTACATGACACTTTTTCTTCTTTCGGACAAATTATGTCTTGCAAAATAGCAACTGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGGCTGAGGATTCTGCTCAGAATGCAATTGATAAGTTAAATGGAATGCTGATCAATGACAAGCAGGTGTTTGTGGGTCATTTCCTACGTAAGCAAGATAGAGATAACGTTCTCAGTAAGACAAAATTTAACAATGTCTATGTGAAAAACCTATCAGAGTCATTTACGGAAGATGACTTGAAAAATGAATTTGGAGCTTATGGGACCATTACTAGTGCTGTTTTGATGAGAGATGCTGATGGTAGGTCGAAGTGTTTTGGATTTGTCAATTTTGAAAATGCAGAAGATGCTGCTAAAGCTGTTGAGGCATTAAATGGTAAAAAGGTTGACGACAAGGAATGGTATGTTGGTAAAGCCCAGAAAAAATCTGAACGTGAGCAAGAGCTGAAAGGACGGTTCGAGCAGACTGTAAAGGAATCTGTAGTAGACAAATTTCAAGGTCTGAACTTGTATCTCAAGAACTTGGATGATTCCATTACTGATGAAAAACTCAAGGAAATGTTCTCCGAGTTTGGCACAATTACTTCATACAAGATTATGCGAGACCCAAATGGAGTCAGCAGAGGATCTGGCTTTGTTGCATTTTCAACTCCAGAGGAAGCATCAAGAGCTCTTGGCGAGATGAATGGCAAAATGATCGTTAGCAAACCTCTCTATGTTGCTGTTGCACAGAGAAAGGAAGATAGAAGAGCAAGATTGCAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTACACCTTCTGTTGCACCCCGAATGCCACTCTACCCTCCTGGTACTCCTGGTCTTGGACAGCAATTTATGTATGGTCAAGGACCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGTGGTGGTCCTATGCCAAGCTACTTCGTTCCAATGGTTCAGCAGGGCCAACAAGGTCAGCGCCCTGGTGGACGTCGAGGAGGTCCTGGTCAACAACCCCCGCAGCAAGTGCCAATGATGCAGCAGCAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTCCTGGTCGCAGCAACATTCAAGATGCCCCTGTGCAAAACATTGGTGGAGGAATGATGTCCTATGACATGGGAGGTTTGCCACTTCGCGATGTTGTACCACCTATGCCCATTCATGCTTTGGCTACAGCACTTGCGAATGCTCCCCCTGAACAGCAGAGGACTATGCTTGGAGAGGCTTTGTATCCGCTAGTAGATCAGCTGGAACATGATTCAGCAGCTAAGGTTACTGGCATGCTTCTGGAGATGGACCAGCCTGAAGTATTGCATTTGATCGAGTCACCAGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGAGGTGTTGAGAAATGTTAGTCAACAGCAAGGAAACAGCCCGGCGGATCAACTAGCCTCACTCTCTCTCAATGACTCTTAG 1944 0.447 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPVQNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLNDS* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0495 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Mtr1g0495 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Mtr1g0495 647 SUPERFAMILY PABC (PABP) domain 498 642 IPR036053 GO:0003723
Mtr1g0495 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Mtr1g0495 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 189 IPR000504 GO:0003723
Mtr1g0495 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Mtr1g0495 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Mtr1g0495 647 CDD RRM2_I_PABPs 118 194 IPR045305 -
Mtr1g0495 647 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676
Mtr1g0495 647 SMART poly_2 564 627 IPR002004 GO:0003723
Mtr1g0495 647 SMART rrm2_1 212 284 IPR003954 GO:0003676
Mtr1g0495 647 SMART rrm2_1 121 193 IPR003954 GO:0003676
Mtr1g0495 647 SMART rrm2_1 33 106 IPR003954 GO:0003676
Mtr1g0495 647 SMART rrm2_1 316 388 IPR003954 GO:0003676
Mtr1g0495 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Mtr1g0495 647 Gene3D - 549 631 - -
Mtr1g0495 647 PANTHER POLYADENYLATE-BINDING PROTEIN 21 633 - -
Mtr1g0495 647 MobiDBLite consensus disorder prediction 626 647 - -
Mtr1g0495 647 CDD RRM1_I_PABPs 33 112 - -
Mtr1g0495 647 Gene3D - 196 310 IPR012677 -
Mtr1g0495 647 Gene3D - 24 120 IPR012677 -
Mtr1g0495 647 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676
Mtr1g0495 647 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Mtr1g0495 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Mtr1g0495 647 Gene3D - 313 413 IPR012677 -
Mtr1g0495 647 CDD RRM3_I_PABPs 210 289 - -
Mtr1g0495 647 PANTHER RNA BINDING PROTEIN 21 633 - -
Mtr1g0495 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 625 IPR006515 GO:0003723
Mtr1g0495 647 Gene3D - 121 194 IPR012677 -
Mtr1g0495 647 CDD RRM4_I_PABPs 314 392 - -
Mtr1g0495 647 MobiDBLite consensus disorder prediction 477 504 - -
Mtr1g0495 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Mtr1g0495 647 SMART rrm1_1 316 388 IPR000504 GO:0003723
Mtr1g0495 647 SMART rrm1_1 121 193 IPR000504 GO:0003723
Mtr1g0495 647 SMART rrm1_1 212 284 IPR000504 GO:0003723
Mtr1g0495 647 SMART rrm1_1 33 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0495 Mtr-Chr1 5765766 5770884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0495 1 645 Eukaryotic Initiation Factors Gene Family AT4G34110 67.945 0.0 857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0495 1 5765766 5770884 Mtr1g0495 1 5765766 5770884 ECH