Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0494 ATGAAGGTGCATCAATTCACACGTGGATTTTGGGAGCATGAACCTTCCCTCACACTTGGTTGCAAGCGTTTACGTCCTCTTGCACCTAAAATTTCTTCTAATAACACCGATAATTCTACTACTAACACCCCTTCTCTTTCTTTTGATCTCAAGAGTTTCATTAGACCCGAAACTGCTCCCAGAATTAGTCTTTCTTCCTCTGATGATAACAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACGCATATTCCAGGAGGGACAAGATGGAATCCAACACAAGAACAAATAGGAATATTGGAGATGTTATACAGAGGTGGAATGAGAACTCCAAATGCACAACAAATAGAACAGATTACAGTTCAACTTAGCAAGTACGGTAAAATTGAAGGGAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGCCTTCCTCATAGTCCTCGAACTCCCACCACCACACTTGTGTCTATGTCCCCCACCTTTAGTACTATTACAACTTTGGACACCCCAAAAAGGGTGCAAGTAATGGAAAGAGATCAAGAAGATAGCCCATTGAAGAAGAGTAGGAGTTGGCCATTTGAGTATTTGGAAGAGAAAAATTGGTCAATGTGCAAAGTAGAGGAACATAAAACTCTAGAGCTTTTCCCATTACACCCAGAAGGCAGATGA 711 0.4135 MKVHQFTRGFWEHEPSLTLGCKRLRPLAPKISSNNTDNSTTNTPSLSFDLKSFIRPETAPRISLSSSDDNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPTTTLVSMSPTFSTITTLDTPKRVQVMERDQEDSPLKKSRSWPFEYLEEKNWSMCKVEEHKTLELFPLHPEGR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0494 236 SUPERFAMILY Homeodomain-like 88 155 IPR009057 -
Mtr1g0494 236 Gene3D - 88 155 - -
Mtr1g0494 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 236 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Mtr1g0494 236 MobiDBLite consensus disorder prediction 59 93 - -
Mtr1g0494 236 MobiDBLite consensus disorder prediction 154 170 - -
Mtr1g0494 236 MobiDBLite consensus disorder prediction 29 49 - -
Mtr1g0494 236 MobiDBLite consensus disorder prediction 147 170 - -
Mtr1g0494 236 CDD homeodomain 89 150 IPR001356 GO:0003677
Mtr1g0494 236 Pfam Homeodomain 89 148 IPR001356 GO:0003677
Mtr1g0494 236 ProSiteProfiles 'Homeobox' domain profile. 94 149 IPR001356 GO:0003677
Mtr1g0494 236 MobiDBLite consensus disorder prediction 29 93 - -
Mtr1g0494 236 SMART HOX_1 86 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0494 Mtr-Chr1 5761447 5763031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0494 1 155 Wox Gene Family AT1G46480 64.634 3.20e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr1g0494 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0494 1 5761447 5763031 Mtr1g0494 1 5761447 5763031 ECH