Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0492 ATGGAAGAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACAACCAATAGCCCTATAGCTATAGATCATAAAAATAACAATAACAATAAGGGGATGAAAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATAAGGATGAGAAAGTGGGGTAAGTGGGTGGCAGAGATTAGAGAACCAAACAAAAGATCAAGAATTTGGTTAGGTTCTTACATAACACCTATTGCTGCTGCACGTGCTTATGATACTGCTGTGTTTTATCTTAGAGGTCCTTCTGCAAACCTTAATTTTCCTGAATTGTTGTTCAAAGATCAACAAGAAGATGAAGAAAATCTACAACAACATGGGAATATGTCGGCTGATTCAATAAGGAAAAAAGCTGCACAAGTTGGTGCTAGAGTTGATGCTATTGAAACTAATTCTCTAATTAATCATCATCATCATCATCATGTTTCTTCCAATAATCATGTTCACTCCAATTCTACTTCTTCTCTCAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTGTTGA 543 0.3499 MEEEDREYCCSMNSRTTNSPIAIDHKNNNNNKGMKKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSANLNFPELLFKDQQEDEENLQQHGNMSADSIRKKAAQVGARVDAIETNSLINHHHHHHVSSNNHVHSNSTSSLKPDLNEFPKPEDC* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0492 180 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 Pfam AP2 domain 44 92 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 MobiDBLite consensus disorder prediction 109 129 - -
Mtr1g0492 180 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 179 - -
Mtr1g0492 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 179 - -
Mtr1g0492 180 MobiDBLite consensus disorder prediction 150 180 - -
Mtr1g0492 180 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Mtr1g0492 180 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Mtr1g0492 180 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0492 Mtr-Chr1 5738475 5739586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0492 33 179 AP2-EREBP Transcription Factor Family AT2G23340 56.000 6.67e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr1g0492 AP2 4.6e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0492 1 5738475 5739586 Mtr1g0492 1 5738475 5739586 ECH