Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0485 ATGGATTCCAACACTCTCTCTCCAGCCATGAAACTCATGATCGTTCTCATCATATCCTCCTTCACAGTTTCACTAGCCTTAGACATGTCGATCATCTCCTACGACAAAACCCACCCAGACAAATCAACAAGCAAAAGAACCAACAAAGAAGTGTTGACTATGTACGAAGAGTGGTTAGTGAAACATGGAAAATCCTACAACGGTTTAGGAGAGAAAGACAAAAGGTTTGAGATCTTCAAAGACAACCTTAAATTCATTGATGAACATAACGGTTTGAATTCGACATATAGATTAGGGTTGACCCGGTTCGCGGATCTAACGAATGAAGAGTATAGAAGCAAGTTTTTGGGAACAAAGATCGATCCGAACCGTAGGATGAAGAAATTGGGTGGTTCAAAGAGCAATCGTTATGCGCCACGTGTCGGTGATAAATTGCCTGAGTCTGTTGATTGGAGGAAGGAAGGTGCTGTTGTTGGAGTCAAAGACCAAGCCAGTTGTGGGAGTTGTTGGGCATTCTCAGCAATCGCAGCTGTTGAAGGAATAAATAAGATTGTGACAGGAGATCTAATTTCACTATCAGAACAAGAACTGGTGGACTGTGATACATCATACAACGAAGGATGCAATGGTGGACTTATGGATTACGCCTTCGAGTTCATCATCAGTAATGGTGGCATTGACTCTGAAGATGATTACCCTTACAAAGCTGTTGATGGTAGATGTGACCAGAACAGGAAAAATGCTAAAGTTGTTACAATTGATGACTATGAAGATGTTCCTGCTTATGATGAACTGGCCTTGCAAAAGGCTGTTGCAAACCAGCCTATCGCCGTTGCTGTAGAAGGAGGTGGTAGGGAATTCCAGTTATATGAATATGGTGTATTTACTGGTAGATGTGGAACAGCACTAGACCATGGTGTTGCAGCTGTTGGATACGGTACAGAAAACGGTAAAGATTATTGGATTGTGAGAAATTCATGGGGTGGTAGCTGGGGAGAACAAGGTTACATCAGACTCGAACGTAATCTAGCTTCAAGCAGAGCAGGAAAGTGTGGAATTGCGATCGAGCCATCTTATCCAATTAAGAATGGGCAGAACCCCCCTAACCCTGGACCATCGCCACCTTCACCTATAAAGCCACCATCTGTCTGTGACAGCTACTACAGCTGTGCTGAAGGCTCTACTTGTTGCTGTATTTACGAGTATGGAAGATCTTGCTTTGAGTGGGGATGCTGTCCTCTTGAGTCTGCTACTTGCTGTGATGATCACTACAGTTGCTGCCCTCATGAGTATCCTGTCTGTGACACCCGTGCTGGACTTTGTCTTAAGGGCAAGAACAACCCATTGGGAGTGAAGTCATTCAAACGCACTCCTGCCAAGCCTCACTGGGCCTTTGGAGGTAAGAACAAGATGAGCAATGCTTAA 1425 0.4414 MDSNTLSPAMKLMIVLIISSFTVSLALDMSIISYDKTHPDKSTSKRTNKEVLTMYEEWLVKHGKSYNGLGEKDKRFEIFKDNLKFIDEHNGLNSTYRLGLTRFADLTNEEYRSKFLGTKIDPNRRMKKLGGSKSNRYAPRVGDKLPESVDWRKEGAVVGVKDQASCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIISNGGIDSEDDYPYKAVDGRCDQNRKNAKVVTIDDYEDVPAYDELALQKAVANQPIAVAVEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGGSWGEQGYIRLERNLASSRAGKCGIAIEPSYPIKNGQNPPNPGPSPPSPIKPPSVCDSYYSCAEGSTCCCIYEYGRSCFEWGCCPLESATCCDDHYSCCPHEYPVCDTRAGLCLKGKNNPLGVKSFKRTPAKPHWAFGGKNKMSNA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0485 474 Gene3D Granulin 382 444 IPR037277 -
Mtr1g0485 474 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508|GO:0008234
Mtr1g0485 474 PRINTS Papain cysteine protease (C1) family signature 305 315 IPR000668 GO:0006508|GO:0008234
Mtr1g0485 474 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Mtr1g0485 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Mtr1g0485 474 CDD Peptidase_C1A 146 360 IPR039417 -
Mtr1g0485 474 SMART Inhibitor_I29_2 55 111 IPR013201 -
Mtr1g0485 474 Pfam Cathepsin propeptide inhibitor domain (I29) 55 111 IPR013201 -
Mtr1g0485 474 SMART GRAN_2 384 441 IPR000118 -
Mtr1g0485 474 Pfam Papain family cysteine protease 145 361 IPR000668 GO:0006508|GO:0008234
Mtr1g0485 474 PANTHER CYSTEINE PROTEASE 36 390 - -
Mtr1g0485 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 303 313 IPR025660 -
Mtr1g0485 474 Pfam Granulin 395 442 IPR000118 -
Mtr1g0485 474 Gene3D Cysteine proteinases 36 363 - -
Mtr1g0485 474 SUPERFAMILY Cysteine proteinases 47 361 IPR038765 -
Mtr1g0485 474 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 390 - -
Mtr1g0485 474 SMART pept_c1 145 361 IPR000668 GO:0006508|GO:0008234
Mtr1g0485 474 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Mtr1g0485 474 SUPERFAMILY Granulin repeat 381 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0485 Mtr-Chr1 5603426 5608127 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0485 1 5603426 5608127 Mtr4g3388 4 47231979 47234929 ECH
Mtr1g0485 1 5603426 5608127 Mtr1g4101 1 52563944 52566481 ECH
Mtr1g0485 1 5603426 5608127 Mtr1g0485 1 5603426 5608127 ECH
Mtr1g0485 1 5603426 5608127 Mtr3g3668 3 50558960 50564425 PCT