Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0477 ATGGAACCAAAGAGCGTTAACCCCACGCGCCGCCCTCAACGTGAAGCAAAGAAAAAAGCCGTAGCTGCACTATGCGAACAACAACGCAAACGAAAACGCGTTCCTCTCGGTGAAATAACAAACGACGTTAACACAAACGCAAACGCAAACGCAAACGATGTCGTTTTACCAACGCAGAAGAAACGAAACGTTTCTACTTCATCAAACTCCGATGGAACTCCGGTACCGGAGAAATTGGAGAAATTCGAAGATCCTCAGTTATGTGAAACTTATGTTTCTGATATTTACGATTATCTTCGTAATATGGAGGTTGATTCTAGTAAGAGGCCATTATGTGATTACATACAGAAAGTTCAGAGGGATGTTAATGCGAGTATGAGGGGTGTTCTTGTGGATTGGTTGGTTGAAGTTGCTGAAGAATACAAGCTTGTTTCAGATACGCTTTATTTTTCGGTTTCTTATATCGATCGGTTTTTGTCATTGAATGATTTAACTAGACAGAAGTTGCAATTACTTGGTGTTGCTTCGATGTTGGTTGCTTCAAAATATGAAGAGATTAAGCCACCTGAGGTTGAGGACTTTTGTTACATTACGGACAATACATACTCCAAGGAAGAGGTTTTGACCATGGAGGCTGATATTTTGAAGTCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAGACATTCCTAAGAAGATTCATCACTAAAGTTGGTCTAGAGGGTGTTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTTGCTCTTACCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTGAAATTCTTGCCTTCTATGGTGGCTGCATCAGTTGTATTTCTTGCACGTTTTATGTTAAGCCCGAAGACTCATCCTTGGAATTCCGCCATCTACGAATTCACCAGATATAAACCTGCAGACTTGAAGGAATGTGTTCTAAATATACATGACTTGTACCTTGGTAGGAAAGGTGGCTCTTTGCAAGCTGTGAGAGATAAATACAAACAGCATAAGTTCAAATGCGTGGCAACAACACCCTCTCCCCCGGAGATATCTCTTTCATTTTTTGAATTTAGAGGGGCTGATCCTTAG 1095 0.4073 MEPKSVNPTRRPQREAKKKAVAALCEQQRKRKRVPLGEITNDVNTNANANANDVVLPTQKKRNVSTSSNSDGTPVPEKLEKFEDPQLCETYVSDIYDYLRNMEVDSSKRPLCDYIQKVQRDVNASMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLTRQKLQLLGVASMLVASKYEEIKPPEVEDFCYITDNTYSKEEVLTMEADILKSLKFELGGPTIKTFLRRFITKVGLEGVDASELQFEFLCSYLAELSLLDYNCVKFLPSMVAASVVFLARFMLSPKTHPWNSAIYEFTRYKPADLKECVLNIHDLYLGRKGGSLQAVRDKYKQHKFKCVATTPSPPEISLSFFEFRGADP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0477 364 PIRSF Cyclin_A_B_D_E 1 356 IPR039361 -
Mtr1g0477 364 MobiDBLite consensus disorder prediction 1 20 - -
Mtr1g0477 364 SUPERFAMILY Cyclin-like 83 222 IPR036915 -
Mtr1g0477 364 SMART cyclin_7 132 216 IPR013763 -
Mtr1g0477 364 SMART cyclin_7 229 318 IPR013763 -
Mtr1g0477 364 MobiDBLite consensus disorder prediction 57 74 - -
Mtr1g0477 364 CDD CYCLIN 225 317 IPR013763 -
Mtr1g0477 364 Gene3D - 94 345 - -
Mtr1g0477 364 SUPERFAMILY Cyclin-like 225 350 IPR036915 -
Mtr1g0477 364 Pfam Cyclin, C-terminal domain 225 348 IPR004367 -
Mtr1g0477 364 PANTHER CYCLINS 20 360 IPR039361 -
Mtr1g0477 364 SMART Cyclin_C_2 225 349 IPR004367 -
Mtr1g0477 364 Pfam Cyclin, N-terminal domain 94 222 IPR006671 -
Mtr1g0477 364 Gene3D - 108 223 - -
Mtr1g0477 364 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Mtr1g0477 364 MobiDBLite consensus disorder prediction 57 78 - -
Mtr1g0477 364 CDD CYCLIN 126 215 IPR013763 -
Mtr1g0477 364 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 20 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0477 Mtr-Chr1 5491126 5494580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0477 7 358 Core Cell Cycle Gene Families AT1G47230 58.380 1.57e-144 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0477 1 5491126 5494580 Mtr1g0477 1 5491126 5494580 ECH
Mtr1g0477 1 5491126 5494580 Mtr3g3684 3 50707894 50710149 PCT