Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0460 ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCAAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGGTTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTCCTCAAACTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTAATCATGTACTAGAAAATAATATTAATAATTGTATATCCAATGATTTTCGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTGTGGAGAAAAATGGTTACAATACTCAAATAATGGAACCTTTTGATCTTCACACCAAGCATGAGATGCAAATGAAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCCGTTGAAGAAAAAATTAACAACAATCCGAAGAAAAAACCTCGTGTTTCGAATGATGGCCAAGGATGCATGAAAAATGCAAGGTCAAAGAAGAACCACAAAGTTATTGCTAGCCATGAAGAGGAGATGACAGAAGAGATTAATAGAGGATCAAATGGAAATAGTTCTAGTAGTAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCTGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGACTAAGAGTCTTACAAAATCTTGTACCAAACGGAACAAAGGTTGATATCAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTACAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGCTCTCTACCACTATGA 1101 0.3579 MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYIPQTQENSYNSNSSASDDTNYYFSYPNHVLENNINNCISNDFRMDENLFASSVPSLNEIVMEENVRMNEDSASDDHIVEKNGYNTQIMEPFDLHTKHEMQMKLKRKLDVIEVEVPVEEKINNNPKKKPRVSNDGQGCMKNARSKKNHKVIASHEEEMTEEINRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0460 366 MobiDBLite consensus disorder prediction 197 292 - -
Mtr1g0460 366 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 364 - -
Mtr1g0460 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 345 IPR036638 GO:0046983
Mtr1g0460 366 Pfam Helix-loop-helix DNA-binding domain 290 330 IPR011598 GO:0046983
Mtr1g0460 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Mtr1g0460 366 Gene3D - 279 337 IPR036638 GO:0046983
Mtr1g0460 366 SMART finulus 286 335 IPR011598 GO:0046983
Mtr1g0460 366 CDD bHLH_AtIND_like 281 343 - -
Mtr1g0460 366 MobiDBLite consensus disorder prediction 225 239 - -
Mtr1g0460 366 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 364 - -
Mtr1g0460 366 MobiDBLite consensus disorder prediction 240 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0460 Mtr-Chr1 5329097 5330938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0460 255 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 79.612 8.04e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g0460 HLH 1.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0460 1 5329097 5330938 Mtr1g0460 1 5329097 5330938 ECH