Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr1g0448 | ATGGCATTTGCAGGAACAACTCAGAAGTGTATGGCTTGTAACAAAACAGTTTATCTTGTTGATAAGTTAACTGCTGATAATAGAATTTTCCACAAAGCTTGTTTCAGATGTCACCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTCGACCAACTGTTCAAAAGAACTGGTAGCCTTGAGAAAAGCTTTGAAGGGACACCGAAAATTGTCAAGCCAGAAAGAAATATAGATAATGAGAAACCTGCTGCAGCTAAAGCCTCAAGTATGTTTGGTGGAACAAGGGACAAATGTTCTGGTTGTCAGAAAACAGTGTATCCAACTGAGAAGGTTACAGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGTTGTCATGGAGGGTGTACTATCAGTCCTTCCAATTACATAGCACATGAGGGAAAACTCTACTGCAAACACCACCATATTCAACTGATCAAGCAAAAGGGAAATTTAAGCCAGCTAGAAGGTGACCATGAGAAAAATGCTGGGAAAATCAATGGTGAAGAAGTTGCAGCTGAAACTTGA | 588 | 0.3997 | MAFAGTTQKCMACNKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPERNIDNEKPAAAKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKQKGNLSQLEGDHEKNAGKINGEEVAAET* | 196 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr1g0448 | 195 | MobiDBLite | consensus disorder prediction | 173 | 187 | - | - | |
| Mtr1g0448 | 195 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Mtr1g0448 | 195 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Mtr1g0448 | 195 | PANTHER | OS06G0237300 PROTEIN | 1 | 194 | IPR045268 | GO:0051015 | |
| Mtr1g0448 | 195 | Pfam | LIM domain | 110 | 164 | IPR001781 | - | |
| Mtr1g0448 | 195 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Mtr1g0448 | 195 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Mtr1g0448 | 195 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
| Mtr1g0448 | 195 | Gene3D | Cysteine Rich Protein | 105 | 174 | - | - | |
| Mtr1g0448 | 195 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Mtr1g0448 | 195 | PANTHER | LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE | 1 | 194 | - | - | |
| Mtr1g0448 | 195 | MobiDBLite | consensus disorder prediction | 171 | 195 | - | - | |
| Mtr1g0448 | 195 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Mtr1g0448 | 195 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Mtr1g0448 | 195 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Mtr1g0448 | 195 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Mtr1g0448 | 195 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Mtr1g0448 | 195 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Mtr1g0448 | 195 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr1g0448 | Mtr-Chr1 | 5176327 | 5178255 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Mtr1g0448 | LIM | 1.3e-12 | CL0167 |
Event-related genes