Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi12g1002 ATGTCAGCATCTCCGGCGACAACAAAAGACGACGGCCAGGGCTCCGGCGGCCGGAAAACCACCCCGGCGGCGAAGCAGTTAGAGCAAGGGCTAAAGTGTCCAAGATGTGACTCACCCAACACTAAATTCTGTTACTACAATAATTACAGCCTTACTCAGCCAAGGCATTTCTGCAAGACCTGCCGGAGATACTGGACAAAAGGTGGGGCCCTCCGTAACGTCCCCATCGGCGGCGGTTGCCGGAAGAACAAGAAACTGAAGTCATCATCATCTTCTTCTTTATCATCATCTTCAAGACTCTCAAATGACATTGGTTTTCCACCTTCTCTTGATTTTCACCTAGGTGGTGGTACTAGCTTCTTACCCTTCCCTAGGCTCAATGATCATCCTCCTCCACCTTTTAACCTTGAAGGAACCTCAAATTCTCCTTTCAACATTGGGTTGAATTACCCTTTTAATGGTGGTGTGATTCAAGGCATGAACTCATCCATGAATGTTCAGAGTAATCTTGCTTCTTCTATTGAGTCTTTGAGCTCTATAAACCAAGACTTGCACTGGAAGTTGCAGCAGCAAAGGCTGGCTATGTTGTTTGGAGGAGAGGATGTTATTAATGCTAGTGGTTTAAAAGATAACCAACCAAATGTTTCAACCATTAATCTTGAGAACCAAGGTCATCAGCATCAAAAATCACAACCATCACCACCACATCATCCTATTTGGTTTCAGAATCTTGAGATTTCAAAGCCTGATGATGAAGAGATCTATCCGGTGGCCGCCGGAAATTCGAGGAGAGATACCGCCGCCGCCACCGAGTGGTTCTTTAGAGGCTCATATGCTCCGGTGACTCCGACGCCAACAAGTACAAGCAGTGGTGGTGGTGGTGGTGGAGGTGGTAATAATAATAATGGGAATGATAATGGAAGCAGTAACTGGAGTCTTCAAGGTTGGGGTGATGTGCAGCAGCAATACAGTGCTTTGCCCTAG 984 0.4654 MSASPATTKDDGQGSGGRKTTPAAKQLEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLKSSSSSSLSSSSRLSNDIGFPPSLDFHLGGGTSFLPFPRLNDHPPPPFNLEGTSNSPFNIGLNYPFNGGVIQGMNSSMNVQSNLASSIESLSSINQDLHWKLQQQRLAMLFGGEDVINASGLKDNQPNVSTINLENQGHQHQKSQPSPPHHPIWFQNLEISKPDDEEIYPVAAGNSRRDTAAATEWFFRGSYAPVTPTPTSTSSGGGGGGGGNNNNGNDNGSSNWSLQGWGDVQQQYSALP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi12g1002 327 MobiDBLite consensus disorder prediction 1 24 - -
Mibi12g1002 327 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Mibi12g1002 327 MobiDBLite consensus disorder prediction 280 327 - -
Mibi12g1002 327 MobiDBLite consensus disorder prediction 277 327 - -
Mibi12g1002 327 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Mibi12g1002 327 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Mibi12g1002 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 216 IPR045174 GO:0003700|GO:0006355
Mibi12g1002 327 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi12g1002 Mibi-ChrMibi12 24882450 24883433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi12g1002 9 327 C2C2-Dof Transcription Factor Family AT5G65590 36.415 9.69e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi12g1002 zf-Dof 9.2e-33 No_clan