Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2039 ATGGAGAGTGGTGAGTGGAAGCCTAAAGTTGAGATATCACCAAACTGTCCAAGGTGTGGATCATGTAACACCAAATTCTGTTACTACAATAACTATAGTTTAACCCAGCCTCGCTACTTCTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCACTCCGGAATGTTCCCGTAGGCGGTGGCTGCCGGAAAAACCGCCGTGGCAGTAAGACCTCCTTCAGACAACCATCCATGGACAATTCTCTTCCTCCAAAGAATATGTCACCTCATGGAGATAATTGTAATAATCCAGCAATAGATCCAACTTCATGTAGCTCCTCAGGTGCGTGTGATGCTCCAAGAATTGATCTTGCACTTGTTTATGCGAATTTCCTCAATCAAAAGCCAGATTCTTCAAGAGCACCAGTAAGTGCAGAAGATGATAAGCTTATTGGTGTAGGTGGGTGTTTGACGACAGAATCACAGATGAGTGAGAGTGATCAAATGTACGGCCTGTATGGGTTAAACTCTGTGCCGAAAAATCAGGAAGAGCAGGGGATTGAACAACGTTGTAGTAGTAGTGGTAGTCATGATGATGGTATTATGAATTTTGAGTTGCCGCCATTGCCAGGTGAAGAGGCCTTGCATGATGATATGATGTGGAACAATTCTGGCTTCCACTCCTCTTCTCAGTTCCCTCTTTTTGGTGCTGAAAATGATGCTCATGATGGCGACTTCTTATTGGATAATTGGAGCAACTTCCATTTATCTAGGCCTTGA 762 0.4449 MESGEWKPKVEISPNCPRCGSCNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGSKTSFRQPSMDNSLPPKNMSPHGDNCNNPAIDPTSCSSSGACDAPRIDLALVYANFLNQKPDSSRAPVSAEDDKLIGVGGCLTTESQMSESDQMYGLYGLNSVPKNQEEQGIEQRCSSSGSHDDGIMNFELPPLPGEEALHDDMMWNNSGFHSSSQFPLFGAENDAHDGDFLLDNWSNFHLSRP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2039 253 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Mibi06g2039 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 186 IPR045174 GO:0003700|GO:0006355
Mibi06g2039 253 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Mibi06g2039 253 MobiDBLite consensus disorder prediction 59 91 - -
Mibi06g2039 253 MobiDBLite consensus disorder prediction 72 91 - -
Mibi06g2039 253 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 6 37 IPR017896 -
Mibi06g2039 253 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2039 Mibi-ChrMibi06 40840451 40841212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2039 6 218 C2C2-Dof Transcription Factor Family AT3G52440 44.643 8.80e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi06g2039 zf-Dof 2.4e-30 No_clan