Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0341 ATGCGACTAGATAAAGGCGTTGCCACAATGCCAAGCAAAAAATCCACCCTGCAAAGCACTGTCTTCTTGTTACTCTTGGAGGTTCTGAGTTTGATCAATGTCGCTCATGTGAGCTGCAAATCTACAATCGAGCCCTGCTCCAACCCTGATTCCTGCAATGCTCTGCTCGGATACACTCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCAATTTCTCTTCTCACTGCAAATGCCATTGACATTTCTTATCCCGACGTGGAGCATCACATTCTTCCCTCTCGCCTCTTCCTCAAAATCCCCATCACTTGTTCCTGTGTTGATGGAATTCGCAAATCCGTGTCGACTCACTACAAAACTCGGCCCTCTGATACTCTCTCTTCGATTGCGGATTCCATATATGGGGGTTTGGTGTCTGCTGACCAGCTTAGGGAAGCCAATTCGATAAGTGACCCTTCGGTGCTTGATGTGGGTGAGAGTCTTGTCGTGCCACTTCCATGCACTTGCTTCAATGGTACTGATAACTCTTTGCCTGCAATCTACCTCTCGTATGTGGTTCAGCCGATCGATACTTTGGCCGCAATTGCCGCGAGGTATTTCACCACTTTGACTGATTTGATGAACGTCAATGCCTTGGGAAGTTCAGCTATAGACGATGGCGATATTCTTGCTATACCCATACCTGCATGCGCATCAAATTTCCCAAAATATGCCTCTGATCATGGGTTGCTTGTCCCTAACGGAAGCTATGCCATCACAGCGGGTCACTGCGTGCTATGTAGCTGTGGGCCACGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCCAACATGCAATGTAAAAGAAGCAGTCTCATGCTCGGAAATATTACAGCGCAACAGGGTGGTGGTGGTTGCAGTGTTAATTCATGCAATTATAACGGTTTTGCTAATGGCACCATACTAACAGCATTGTCTACATCTCTTCAACCTCGATGCCCAGGGCCACAGCAATTTCCTGCACTCACAGCACCGCCTACTACTGTTCCGAGAGCCTCAATATTTGCACCAGCACCGTCACCTCTGTTAGATGGAGCTGGTCCTTTATCACCCAAATCATCAGTGGTTCCAGCGTCGGGGTCGTTTCCAGGTGTCCATCCTGCTAATGGCCCTATGAGCGGCCTTACTTCCGGTGCTTCTGGTGCATGTTTAGTGAATCCTTTGCCAGCTTTGACAACTGCGCTTGTGTTTTTGCTTGTCAAGTTGATGATTTCTATGGTATTGTAA 1299 0.475 MRLDKGVATMPSKKSTLQSTVFLLLLEVLSLINVAHVSCKSTIEPCSNPDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSISDPSVLDVGESLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNALGSSAIDDGDILAIPIPACASNFPKYASDHGLLVPNGSYAITAGHCVLCSCGPRNLNLYCMPASLAVSCSNMQCKRSSLMLGNITAQQGGGGCSVNSCNYNGFANGTILTALSTSLQPRCPGPQQFPALTAPPTTVPRASIFAPAPSPLLDGAGPLSPKSSVVPASGSFPGVHPANGPMSGLTSGASGACLVNPLPALTTALVFLLVKLMISMVL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0341 432 SUPERFAMILY LysM domain 188 233 IPR036779 -
Mibi05g0341 432 CDD LysM 122 169 IPR018392 -
Mibi05g0341 432 CDD LysM 189 231 IPR018392 -
Mibi05g0341 432 ProSiteProfiles LysM domain profile. 188 231 IPR018392 -
Mibi05g0341 432 Gene3D LysM domain 116 178 IPR036779 -
Mibi05g0341 432 Pfam LysM domain 124 170 IPR018392 -
Mibi05g0341 432 Pfam LysM domain 190 232 IPR018392 -
Mibi05g0341 432 Gene3D LysM domain 179 240 IPR036779 -
Mibi05g0341 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 341 - -
Mibi05g0341 432 ProSiteProfiles LysM domain profile. 122 169 IPR018392 -
Mibi05g0341 432 SMART LysM_2 189 232 IPR018392 -
Mibi05g0341 432 SMART LysM_2 123 170 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0341 Mibi-ChrMibi05 3329553 3331890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0341 21 406 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.103 0.0 550
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0341 05 3329553 3331890 Mibi05g0341 05 3329553 3331890 ECH