Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1795 ATGGTTTTCACTTCTATCCCTCCTTATCTTGATCCATCCAACTGGCAACAACAGCAAAGTAATCCTCACCATACAAGCTCTCTCGCCGGCTTGGTCGGCCTGAGCTCTCATCAACACCCACATCATCCACAACTTCTCTCTCCGCCACCACCTCCTCCTCCTCCTCCTCCACCGCAGCCTCACGGAGGAGGGGGAGGGACGGGTTCGATAAGGCCGGGCTCGATGGCGGATCGGGCCCGGATGGCGAACATACCGATGCCGGAAGCGGCCCTAAAATGTCCAAGGTGTGATTCAACAAACACAAAGTTCTGCTACTTCAACAACTACAGCCTCTCCCAGCCCCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACACGTGGCGGCGCCCTTAGGAACGTCCCCGTCGGAGGCGGCTGCCGTAGGAACAAGAGATCAAGCAAAGGAAGCAGCAGCAGCTCCAAGTCACCAGCTAGCTCAGATCGCCAAGCTGGCAGCACAACCTCAACCAATTCAGCTTCTTCCAACAGCAACTCCGGCGCCGGTGACCTAACCGCCCTCAACCCTCACGCGCCGCCCCTCCGATTCATGTCCCCTTTACTCTCCGATTTCGCTGCCGGCGGTGGCAGTGACATGGGATTAACAACCTATGGTGTGAATTATAACGCAATTTCAGCACCAATGGGAGGATTAGTAAGTGACTTGAATTTCCAAATAGGAACCGCCTTTGCCGGAGTAGGAGGCGGCGGCACCGCCACAGTGCCGGGTGGAAGTAGTGGCGGCGGCGGCGGGGCCGGGTCGATATTATTCGCTCCGGGCTTGGAGCAATGGCGTGTGCCACAAGCACAACAATTTCCTTTCTTGGCCGGACTTGAAGGTTCGCCGGGGTTGTACTCTTTTGAAGGCGGTGGTGTCGGAGGAGAGGGACCGGGATATGGCTGCTTGATGAGTCTCCGGGGGAAGGCGGCGGCGGCGACGGCTTCGGGGTTGATAAGTCAGCTGGCTTCAGTGAAAATGGAGGATAACAACAACAATAATAATAATAACAACAATACAAGCAATGAGGAGATGAATTTGTCAAGCCAGTTTCTGGGAAGTGATCATCATCATAATCAGTATTGGGGTAATACTACTACTACTACTAATGTTGGTGGTGGTTCTTCTACTTCTGCTTGGACTGATCTTTCTGGGTTTAGTTCATCTTCAACTACTAGCAATCCACTATAG 1227 0.5395 MVFTSIPPYLDPSNWQQQQSNPHHTSSLAGLVGLSSHQHPHHPQLLSPPPPPPPPPPPQPHGGGGGTGSIRPGSMADRARMANIPMPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKGSSSSSKSPASSDRQAGSTTSTNSASSNSNSGAGDLTALNPHAPPLRFMSPLLSDFAAGGGSDMGLTTYGVNYNAISAPMGGLVSDLNFQIGTAFAGVGGGGTATVPGGSSGGGGGAGSILFAPGLEQWRVPQAQQFPFLAGLEGSPGLYSFEGGGVGGEGPGYGCLMSLRGKAAAATASGLISQLASVKMEDNNNNNNNNNNTSNEEMNLSSQFLGSDHHHNQYWGNTTTTTNVGGGSSTSAWTDLSGFSSSSTTSNPL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1795 408 Pfam Dof domain, zinc finger 90 145 IPR003851 GO:0003677|GO:0006355
Mibi04g1795 408 MobiDBLite consensus disorder prediction 368 408 - -
Mibi04g1795 408 MobiDBLite consensus disorder prediction 132 187 - -
Mibi04g1795 408 ProSitePatterns Zinc finger Dof-type signature. 93 129 IPR003851 GO:0003677|GO:0006355
Mibi04g1795 408 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 320 IPR045174 GO:0003700|GO:0006355
Mibi04g1795 408 MobiDBLite consensus disorder prediction 144 184 - -
Mibi04g1795 408 MobiDBLite consensus disorder prediction 9 33 - -
Mibi04g1795 408 ProSiteProfiles Zinc finger Dof-type profile. 91 145 IPR003851 GO:0003677|GO:0006355
Mibi04g1795 408 SUPERFAMILY Formin homology 2 domain (FH2 domain) 48 58 - -
Mibi04g1795 408 MobiDBLite consensus disorder prediction 43 62 - -
Mibi04g1795 408 MobiDBLite consensus disorder prediction 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1795 Mibi-ChrMibi04 47483829 47485353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1795 1 342 C2C2-Dof Transcription Factor Family AT2G37590 41.176 1.21e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi04g1795 zf-Dof 1.9e-32 No_clan