Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3016 ATGAGAATCCACATCCAATTTCTCTTATACCTCGCTCTCTTCAGCATCCTCTGCCTCGTACAAACCAAATCCATCATCGAACCTTGTTCCTCCTCAGATTCCTGCTTCTCCCTCCTCTCCTACATCGTCCCCTACGACTCAAAACTCTCCGAAATCGCCTCAAGATTTCAAAAAAACATCTCCGACATCCTCGCCGCCAACAACATCTGGCCAACATCAGACAAAATCTCCGACCAAATCATCAGACCTAAATCCATAGTGAAAATCCCAATGTCATGCCCTTGCGTCGACGGAATACGAAGATCTATGTCCACAAATTACACTGTGTTAGCATCGGACACATTGGAGACCATATCGGAGGGATACGGTGGTTTGGTTAGCGCAGATCAGATCGCCACCGTTAATAGCATCAATACGACGAACCGTTTAGAGAATGGAGGGGGGTTGGTGATACCGTTGCCGTGTTCGTGTTTGAATAATGTGAGGAATGGTGAAACGACAGTGTATATGTCGTTTGTGGTGAGGGAGGGAGAGAGCTTGAGGAGTATTGCGTTGGATGCCAAAACGACAGTGTCGGATTTGGAAGGTGTGAATGGATTGAGTCATGACTCGGTGGTTCCTGGAGATGTCATCGCCCTCCCCATTGCAGCATGTTCTTCAGCAACACTGAACTGGTACAACGAGAGTCTTATTGTCCCAAATGGCTCATACACTCTTACTGCCTCTGACTGCATCAAATGCTCTTGTAGCCCCATTGATCTCAGGCTGCAATGCTATCCATCTGGTCTACCAGTTCCTTGTTTCAACTTACAGTGCAAAGATTCCAATCTTGTAATTGGAGACAAATATGTCACTTATTTCACACCTGGCTGTAACGTCACTCAGTGTCTTTATCGTGGCCACAGAGGTGGCAAGATTCTAAGAAGTGTGTCGGAATCTTCTTATCTCAAGTGTCCGGAAAATGAGACTTATAATGCAGCAGCAACTCCTTGGCCATCAATAAATTTAAATCCAGTAATGACGCCATTTGGGGAACTTTCTCCATATCCGTCACCTAGTCCTGTTTCTGATGCTTTGATGATGATCGCCACTCAAGCTTCTATCAAGTTCCTCCTTTTACTCCTTTGGATTTGTTTCCTGTGA 1143 0.4558 MRIHIQFLLYLALFSILCLVQTKSIIEPCSSSDSCFSLLSYIVPYDSKLSEIASRFQKNISDILAANNIWPTSDKISDQIIRPKSIVKIPMSCPCVDGIRRSMSTNYTVLASDTLETISEGYGGLVSADQIATVNSINTTNRLENGGGLVIPLPCSCLNNVRNGETTVYMSFVVREGESLRSIALDAKTTVSDLEGVNGLSHDSVVPGDVIALPIAACSSATLNWYNESLIVPNGSYTLTASDCIKCSCSPIDLRLQCYPSGLPVPCFNLQCKDSNLVIGDKYVTYFTPGCNVTQCLYRGHRGGKILRSVSESSYLKCPENETYNAAATPWPSINLNPVMTPFGELSPYPSPSPVSDALMMIATQASIKFLLLLLWICFL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3016 380 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Mibi01g3016 380 CDD LysM 107 151 IPR018392 -
Mibi01g3016 380 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Mibi01g3016 380 Gene3D LysM domain 101 160 IPR036779 -
Mibi01g3016 380 SUPERFAMILY LysM domain 170 214 IPR036779 -
Mibi01g3016 380 SMART LysM_2 171 214 IPR018392 -
Mibi01g3016 380 SMART LysM_2 106 152 IPR018392 -
Mibi01g3016 380 SMART LysM_2 40 90 IPR018392 -
Mibi01g3016 380 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 320 - -
Mibi01g3016 380 Pfam LysM domain 173 214 IPR018392 -
Mibi01g3016 380 Pfam LysM domain 49 90 IPR018392 -
Mibi01g3016 380 Pfam LysM domain 107 152 IPR018392 -
Mibi01g3016 380 CDD LysM 173 213 IPR018392 -
Mibi01g3016 380 Gene3D LysM domain 161 224 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3016 Mibi-ChrMibi01 53534753 53539873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3016 7 324 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.724 2.37e-80 250