Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02389 ATGAAAACCTACCATAACCAGAATAATCATCATCATCATCATCATCTTGCTTTGAAATGTCCTCGCTGTAATTCCTTCAACACGAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCTCGTCATTTCTGTAAGAACTGTCGTCGCTACTGGACTAAAGGTGGCGTCCTTCGTAACGTCCCCATCGGCGGTTGTTCCCGTAAATCAAAGAAATCAAAGACGGCATCATCTTCTTCCATCACCGCTTCAGCAGCAACCACGCCAACGCCGCCTCAACTGGAAGCTGATAAGTCAGATTCTCACTCCAACAGTGAAGGCTCAACCGTTAGGGTTAACTCTGTCATAGAAAATGAACAAGTTAATGAGGTATTTTTCCATGGTCACAAGACCAAATCAATAATGTTTGGACACACACAATTATCATATGAATTTGGATCGTTGGATTGGGAAGGTGGTGCTAACACCGTTGATCAGTCTTACTGGACACACTCTCATTATTCTGATCATGTTAATCATTCATCCTCTCTTTTTCATTTTCCCTGA 546 0.4231 MKTYHNQNNHHHHHHLALKCPRCNSFNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPIGGCSRKSKKSKTASSSSITASAATTPTPPQLEADKSDSHSNSEGSTVRVNSVIENEQVNEVFFHGHKTKSIMFGHTQLSYEFGSLDWEGGANTVDQSYWTHSHYSDHVNHSSSLFHFP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02389 181 ProSiteProfiles Zinc finger Dof-type profile. 18 72 IPR003851 GO:0003677|GO:0006355
Mepo6g02389 181 MobiDBLite consensus disorder prediction 63 113 - -
Mepo6g02389 181 ProSitePatterns Zinc finger Dof-type signature. 20 56 IPR003851 GO:0003677|GO:0006355
Mepo6g02389 181 MobiDBLite consensus disorder prediction 70 98 - -
Mepo6g02389 181 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 130 IPR045174 GO:0003700|GO:0006355
Mepo6g02389 181 Pfam Dof domain, zinc finger 18 72 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02389 Mepo-Chr6 32599558 32600211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02389 7 93 C2C2-Dof Transcription Factor Family AT5G60850 72.414 1.94e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo6g02389 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02389 - - mtr:11413199 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g02389 6 32599558 32600211 Mepo6g02389 6 32599558 32600211 ECH
Mepo1g01180 1 11558940 11560557 Mepo6g02389 6 32599558 32600211 PCT