Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00555 ATGGCTGAAGTGAAAAAAGGTGAAGAGATACAAGGGATTAAGCTATTTGGCACAACAATAAAATTGCATGTCCAAGATGAAAAAGAAAGTGAAAATCAAACGGTGGAGAAGAAGATAGAAAAGATTGTACCATGTCCAAGATGCGAGAGTATGGAAACTAAATTTTGTTATTTCAATAACTACAACGTTAATCAACCAAGACATTTTTGTAAGAGCTGTCAAAGGTACTGGACGGCTGGCGGGGCCCTCCGTAACGTACCAGTTGGGGCTGGTCGTCGGAAGGCCAAGCCTCCGGGTCTTGAGGATAGCGGTTCACCGGAAAGTTGTCTCTACGAAGCTGCTAGTTCTGATGATGGCCATAACTACTCAGGGTTAGAGCAATTTATGCCTCCTCATAGTGATTTTCGAGAAGTATTTTCCAGCAAGCGACGGAGGAAGACCTCAGGTGGTTATTCATTAGCATCCTCCTTGTGA 474 0.4367 MAEVKKGEEIQGIKLFGTTIKLHVQDEKESENQTVEKKIEKIVPCPRCESMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGLEDSGSPESCLYEAASSDDGHNYSGLEQFMPPHSDFREVFSSKRRRKTSGGYSLASSL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00555 157 Pfam Dof domain, zinc finger 41 96 IPR003851 GO:0003677|GO:0006355
Mepo6g00555 157 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Mepo6g00555 157 PANTHER CYCLIC DOF FACTOR 2 27 102 IPR045174 GO:0003700|GO:0006355
Mepo6g00555 157 MobiDBLite consensus disorder prediction 88 108 - -
Mepo6g00555 157 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Mepo6g00555 157 MobiDBLite consensus disorder prediction 136 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00555 Mepo-Chr6 5683371 5683986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00555 8 152 C2C2-Dof Transcription Factor Family AT1G29160 47.399 1.71e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo6g00555 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00555 - - pvy:116140443 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00555 6 5683371 5683986 Mepo6g00555 6 5683371 5683986 ECH