Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00454 ATGGAGCAAGAAGGTGGTGATGGTGGAAGAAGAGGTGAGATGAGTAAGCATGTTCAAGCTCATCCTCAACCTCATAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCTCGTTTCTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACTTTGAGAAATGTTCCTATTGGTGGTGGTTGTCGTAAGGGAAAGAAAACCAAAACTTCATCCTCAACACCATCAAGTAATTCCTTAGGGAATTCTTCTCTGTCTCAGCCAACACTGCCACAATCAACCGATCAGTTGACCATGGCTGCGATGGCTAAAAACTCTTCTTCTGTTTTTGCTTCATTTTCCTCTGCTGCTTCTTTTTATCAAGGAGGTGTTGTTGGTTACATGTCGCCTTTTGCGGCATTTAATCATTCTTTGAGTTCAAATCCATCAGCACACTATTCATCACACACTTTTCAACAATCTCAGAATGTTGGTGTTGGTCTTGGTTCTTCTTCAAATTTGAGCCTTTTACAAGGTTTCAATGTTGCTGCTGCTGCTGCTCTTGTAAGCTCATCACAAGGACAAAATCGTCAACCACCCCAACAATTCTTTCAGCTAGGTGGTAATGGAGGACCAATGTTTACCTCTGAACCACGAGGTTTGAATTTGATTCCTCCATCTAGCATGGTTAATGCTGCTACTTCTGTTGCTACTGCTTCTGCTGCTCATAATGAAAATTGGCCTCAAAGCTTCATCAATAATGGTAGCAACATAGCCTCTGATCAATCTTTATGGAGTACTATCAGCACCACTTCAATTAATGGTGGTGGAAATTCTGACAGGAATGGTGTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGTTGGTGCTGGTGGTAGCCGTGGTGTTGGTGCTGGTGGTAGTGGTAGTGCTGGTGCTGGGGCTAGTGGTTCTGCTTCTTTGGCTCTAAATCAATGGCATGATCTGTCAGGGTTCAATCCTCCTCAGTGA 1023 0.4409 MEQEGGDGGRRGEMSKHVQAHPQPHKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPIGGGCRKGKKTKTSSSTPSSNSLGNSSLSQPTLPQSTDQLTMAAMAKNSSSVFASFSSAASFYQGGVVGYMSPFAAFNHSLSSNPSAHYSSHTFQQSQNVGVGLGSSSNLSLLQGFNVAAAAALVSSSQGQNRQPPQQFFQLGGNGGPMFTSEPRGLNLIPPSSMVNAATSVATASAAHNENWPQSFINNGSNIASDQSLWSTISTTSINGGGNSDRNGVGAGAGAGAGVGAGGSRGVGAGGSGSAGAGASGSASLALNQWHDLSGFNPPQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00454 340 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Mepo6g00454 340 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g00454 340 MobiDBLite consensus disorder prediction 70 103 - -
Mepo6g00454 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 192 IPR045174 GO:0003700|GO:0006355
Mepo6g00454 340 MobiDBLite consensus disorder prediction 78 103 - -
Mepo6g00454 340 MobiDBLite consensus disorder prediction 1 25 - -
Mepo6g00454 340 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Mepo6g00454 340 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00454 Mepo-Chr6 4662282 4663428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00454 18 109 C2C2-Dof Transcription Factor Family AT5G60850 60.870 5.50e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo6g00454 zf-Dof 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00454 - - mtr:11445593 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00454 6 4662282 4663428 Mepo6g00454 6 4662282 4663428 ECH
Mepo2g03257 2 42219531 42221697 Mepo6g00454 6 4662282 4663428 PCT