Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g03638 ATGTTGGAAGCAAAAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTATCGGAGATCTCTGCCGGATCCAGTGACTCTACCGGAGCACCGGCTACATCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGGTTCTTCCATGGATGAAGAAGAGAGAGAAATTGATGAGGACACAATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGATTACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGATGAGCAAAATGCATCGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGCCCCCGTTGTTATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGCGCCGGTCGCAGGAAGAACAAAAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGTCGTTCAGAATTCTCTATCTGACTCTCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACCGATACACCCTTGTGTGAATCAATGGAATCTGCATTGAACCTTGCTGATAAAGGAGTTAGTATTTCCCCAAAAAATGGATTCATTAGACCGGAAGAACTGCGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCCGACACATCAACAGCGCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATGGTCAAAGCTTCCCACCACAAGTTCCGTATTACCCCGGTGCTCCTTGGCTTTTGCCGTGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCAGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCATCACCAAATAGTGCAGCTGTTAACTCCGGTCCTAACTCGCCAACCTTAGGCAAGCATTCAAGGGAAGAAAGCATGCTCAAACCGACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCAAAAACATTGAGGATTGATGACTTGGGAGAAGCGGAAAAAAGCTCAATATTGACAACTCTCGGGATTAAAAACAATAAGGCGGACGCGATTCGTGGGGGAGGACTTTTCAAAGCCTTTGCTTCAAAGAGCAATGAAAAAGATAGCGTGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA 1488 0.4489 MLEAKDPAIKLFGKTIPVSEISAGSSDSTGAPATSSGDAVDDGIIQNHGSSMDEEEREIDEDTMEDESTKCKKEKDEALTQSSEKITDLDTNSRLVEESINPSTEDEQNASKTSKIMEEHTENSHDKTLKKPDKILPCPRCYSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETVVQNSLSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMESALNLADKGVSISPKNGFIRPEELRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNGQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAVNSGPNSPTLGKHSREESMLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKADAIRGGGLFKAFASKSNEKDSVQNSPAMQANPAAMSRSISFHETS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g03638 495 MobiDBLite consensus disorder prediction 465 495 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 395 418 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 374 394 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 374 418 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 466 495 - -
Mepo5g03638 495 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Mepo5g03638 495 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Mepo5g03638 495 MobiDBLite consensus disorder prediction 19 35 - -
Mepo5g03638 495 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Mepo5g03638 495 MobiDBLite consensus disorder prediction 111 130 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 14 130 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 84 110 - -
Mepo5g03638 495 MobiDBLite consensus disorder prediction 64 83 - -
Mepo5g03638 495 PANTHER CYCLIC DOF FACTOR 2 4 495 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g03638 Mepo-Chr5 45067640 45070426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g03638 6 495 C2C2-Dof Transcription Factor Family AT5G39660 41.541 2.06e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo5g03638 zf-Dof 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g03638 - - mtr:11414470 931.784