Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g02729 ATGGAGATGATACATCAAGAAAATTCTGAAATCAATGGTATATCAGGGTCAGGATCTTCTTGCCTTTATGATCTCTTTTGCACTGAAACACCAAGTTTAAATTCTCAAAGTCAAAGAGAGCGATGGATGTTATCTGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCTGGGAACAAGTTCTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACACAGAAGCCTAGGAGTTCATATATCTAAGGTTCTGTCACTGAATCTAGATGAATGGACAGACGAACAAGTTGATTCATTGGTCAACTTGGGTGGAAATACACTAATCAATATGAAGTACGAAGCTTGCGTGCCAAGTTACATAAAAAAACCAAAACCAAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGAGAAAATATGAGCTGCAACAATTTTTGGATTCTGAGGAGAATTTGATTTGTCCCTTTATACCATCCCACGCAAGAACAACTTCATCTAGTCAGAGCAGTTCCTCAAACTACAATCCTCCACAAGAAAAAAAACGTTATGATAAACAAACAACTAGAAATCGTATTGGGCTATCGTTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGAGTAAGAGTACAAAGAAGAGTAATTCGTTGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTAACCTAGCTATCAGAGATATAGTGACTAGTGACCCTTATGTTATCCTTTCTCTTGGTCACCAATCGGTGAAGACGCGTGTCATAAAGAACAATTTAAATCCTGTTTGGAATGAAAGCTTAATGCTGTCAATCCCTGAGAACATCCCTCCTCTTAAAATAATTGTATACGACAAAGATTCGTTCAAAAACGACGATTTTATGGGAGAGGCTGAAATAGACATTCAACCATTAGTATCAGCAGCAAAAGCATATGAGAAATCATCAATCATGGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAATACACTTGTTAAAGATGGAATAATTTCTCTTGAAGAAGGGAAAGTGAGACAGGAAATCTCACTGAGGCTACAAAATGTTGAGAGAGGTGTTCTTGAAATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 1194 0.3819 MEMIHQENSEINGISGSGSSCLYDLFCTETPSLNSQSQRERWMLSGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDSLVNLGGNTLINMKYEACVPSYIKKPKPNSSIEERSDFIRRKYELQQFLDSEENLICPFIPSHARTTSSSQSSSSNYNPPQEKKRYDKQTTRNRIGLSFRNSWGRKDSESKSTKKSNSLAGMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSIMESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQNVERGVLEIELECVPLTQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g02729 397 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Mepo5g02729 397 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Mepo5g02729 397 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Mepo5g02729 397 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Mepo5g02729 397 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Mepo5g02729 397 MobiDBLite consensus disorder prediction 178 194 - -
Mepo5g02729 397 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Mepo5g02729 397 Pfam C2 domain 242 332 IPR000008 -
Mepo5g02729 397 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 397 IPR044518 GO:0005096|GO:0005543
Mepo5g02729 397 MobiDBLite consensus disorder prediction 178 205 - -
Mepo5g02729 397 Gene3D C2 domain 239 394 IPR035892 -
Mepo5g02729 397 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Mepo5g02729 397 SMART C2_3c 242 337 IPR000008 -
Mepo5g02729 397 CDD C2_ArfGAP 240 384 - -
Mepo5g02729 397 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 239 397 - -
Mepo5g02729 397 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 333 IPR035892 -
Mepo5g02729 397 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
Mepo5g02729 397 ProSiteProfiles C2 domain profile. 224 339 IPR000008 -
Mepo5g02729 397 Gene3D Arf GTPase activating protein 30 170 IPR038508 -
Mepo5g02729 397 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g02729 Mepo-Chr5 33162200 33168546 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g02729 5 33162200 33168546 Mepo1g03491 1 40490707 40493946 PCT