Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01901 ATGACTAATGATTCAACCATAAAGCTTTTCGGGAGAACAATTTTTCAAACACACAACACCGATGTTACTACCAATGATTATACCTCAGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACGAACATGATTCAAAGAGATATAAGAAACCATCAAGGAAAGAACCCACCTCAGTACTTGATTATGAAGAAGCCTCAAAACCCACCACAGAGGATTTCAACACTCCCACCACATCGGAAACAGAAACTTCTCAACTGAATTCCACTAAAGTTGATGAACAAAGTGATATTTCCCAGGACAAATCTCCAAACAAAATTCTTCCATGTCCAAGATGCAAAAGCGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCACTTCTGCAAAAACTGTCAGAGATATTGGACTTCCGGAGGAACCACTAGAAGTATGCTTGTAGGTGCAGGTCGCCGCAAGAACAAAATCTCTTCTTTTTCTTCCAATGCCTCACATAATCGTCAAATGAGTACAGTCTTGAACTTTGGATCAGATTCTTCTATTATGTCTTCAACTTCACTTGCCAAGAAAATGAATGTTGGATCAGATGGTGAAACATTTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCATACTACGGTGGTTGTTTGGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTTAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTACTAAGACATTGAGAATTGAAGACCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTAGGAATCAAGAGTGGTGGAGGATTTTTCAATGGATTTGCATCTATGGGTGATGATAAGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1116 0.3862 MTNDSTIKLFGRTIFQTHNTDVTTNDYTSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSNEHDSKRYKKPSRKEPTSVLDYEEASKPTTEDFNTPTTSETETSQLNSTKVDEQSDISQDKSPNKILPCPRCKSVDTKFCYYNNYNANQPRHFCKNCQRYWTSGGTTRSMLVGAGRRKNKISSFSSNASHNRQMSTVLNFGSDSSIMSSTSLAKKMNVGSDGETFDKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPSKPTLGKHSRDGLENNNKESDNNSVLITKTLRIEDPNEAAKGSNWLTLGIKSGGGFFNGFASMGDDKNHVVEAASSVLKANPAALSRSLVFHERI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01901 371 MobiDBLite consensus disorder prediction 45 59 - -
Mepo5g01901 371 Pfam Dof domain, zinc finger 125 180 IPR003851 GO:0003677|GO:0006355
Mepo5g01901 371 MobiDBLite consensus disorder prediction 60 88 - -
Mepo5g01901 371 ProSiteProfiles Zinc finger Dof-type profile. 127 181 IPR003851 GO:0003677|GO:0006355
Mepo5g01901 371 MobiDBLite consensus disorder prediction 278 297 - -
Mepo5g01901 371 PANTHER CYCLIC DOF FACTOR 2 3 370 IPR045174 GO:0003700|GO:0006355
Mepo5g01901 371 MobiDBLite consensus disorder prediction 89 113 - -
Mepo5g01901 371 ProSitePatterns Zinc finger Dof-type signature. 129 165 IPR003851 GO:0003677|GO:0006355
Mepo5g01901 371 MobiDBLite consensus disorder prediction 23 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01901 Mepo-Chr5 20907109 20909147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01901 100 371 C2C2-Dof Transcription Factor Family AT5G62430 46.690 9.96e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo5g01901 zf-Dof 6.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01901 - - mtr:11416079 644.425