Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01900 ATGACTAATGATTCAACCATAAAGCTTTTCGGGAGAACAATTTTTCAAACACACAACACCGATGTTACTACCAATGATTATACCTCAGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACGAACATGATTCAAAGAGATATAAGGAACCATCAAGGAAAGAACCCACCTCAGTACTTGATTATGAACAAGCCTCAAAACAAACCACAGAGGATTTAAAGACTCCCACCACATCTTCAAGCCTTATTGAGAACCCCAAAACTCCCTCATCAGAAACAGAAACTTCTCAACTGAATTCTACTAAAATTGATGAACAAAGTGATGTGTCCCAGGACAAAGCTCCTAACAAAATTCTTCCATGTCCAAGATGCAAAAGTGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCACTTCTGCAAAAACTGTCAGAGATATTGGACTTCCGGAGGAACCACGAGAAGTATGCTTGTAGGTGCAGGTCGCCGTAAGAACAAAATCTCTTCTTTTTCTTCTGATGCCTCACATAATCATCAAATGAGCACTGTCTTGAATTTTGGATCAGATTCTCATATTATGTCTTCAACTTCACTTGCCAAGAAAATGAATGTTGGATCAGATGGTGAAACATTTGGTGAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATTGAACCCAGCAATGTGTTATCCTGTCTCATTCCAACCCAGAATAGCATACTATGGTGGTTGTTTGGTCCCATCATGGAGCGTACAATCTGTCGCAGCTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTCAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGACATTGAGAATTGAAGACCCTATTGAAGCTTCAAAGGGTTCTAATTGGTTAACACTAGGAATCAAGAGTGGTGGAGGACTTTTCAATGGATTTGCATCTATGGGTGGTGATAGGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1152 0.3898 MTNDSTIKLFGRTIFQTHNTDVTTNDYTSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSNEHDSKRYKEPSRKEPTSVLDYEQASKQTTEDLKTPTTSSSLIENPKTPSSETETSQLNSTKIDEQSDVSQDKAPNKILPCPRCKSVDTKFCYYNNYNANQPRHFCKNCQRYWTSGGTTRSMLVGAGRRKNKISSFSSDASHNHQMSTVLNFGSDSHIMSSTSLAKKMNVGSDGETFGESNQCFFPQQFPLNPAMCYPVSFQPRIAYYGGCLVPSWSVQSVAAQSCVPSKPTLGKHSRDGSENNNKESDNNSVLIPKTLRIEDPIEASKGSNWLTLGIKSGGGLFNGFASMGGDRNHVVEAASSVLKANPAALSRSLVFHERI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01900 383 PANTHER CYCLIC DOF FACTOR 2 3 382 IPR045174 GO:0003700|GO:0006355
Mepo5g01900 383 MobiDBLite consensus disorder prediction 289 312 - -
Mepo5g01900 383 MobiDBLite consensus disorder prediction 45 59 - -
Mepo5g01900 383 MobiDBLite consensus disorder prediction 60 77 - -
Mepo5g01900 383 MobiDBLite consensus disorder prediction 79 125 - -
Mepo5g01900 383 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Mepo5g01900 383 Pfam Dof domain, zinc finger 137 192 IPR003851 GO:0003677|GO:0006355
Mepo5g01900 383 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Mepo5g01900 383 MobiDBLite consensus disorder prediction 23 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01900 Mepo-Chr5 20897867 20899567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01900 110 383 C2C2-Dof Transcription Factor Family AT5G62430 44.483 1.37e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo5g01900 zf-Dof 7.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01900 - - mtr:11416079 608.601