Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04738 ATGCGGGGTTCTAGAAAATCTAGAGCTAGACCAAGGCCTAACCCTTTGAAACAATCCAGATTGATCACAAGAAAATTGCAAGTTGTTTTTAATGACCCCGAGGCAACTGACTCATCTGAAGATGAGTCACAACATGCAAGAACACTGACAAAAATAAGCTTCGTTGAAGTCACTCTCCCTCCTCATGTATCTACAGTTTATTTGGCTTCTCAAAACAGTTTCTTTGAGAAGTCAAATACTGTAACAAGGAGAAAGGCATGTCTTTCAACACAACGTCAAACCAAGAAGAAAGTTCTTCCAACAATATCTTCTCCAAAAAAAAAGAGACAATCTTCGTCCAAATACCGAGGCGTTCGTTTAAGGCCATGGGGAAAATGGGCTGCTGAGATTCGTAATCCTTATACAAATGTTAGAATTTGGTTGGGAACTTTCGATACCGTCGAAGACGCTTCTCAAGCTTGTGAATCTAAAAGGCTTCAATTTAAACTTGATCATGAGAAAAATATAGCAAAAATATGCTTCAATAAAAGTTCTTCTGCAATCCCTCCAGTTGCAACATTGAACAAGAACTCTTCTGTAGATGCTGATGTTGCCAATGCTTTAGTGTCAGGAAAATGTTCAACTGCTAAAGACTATGAGAGCTTGTTCTCACAAATATCACCTTCTTCCGTGCTTGAGTTGGATACCTTAGCATCCAATCCGATTGAGAAGGTTGATGTTCCATCAAACAATGAAGTTGCTGTTGTTGTTGATGAAGTGAGTGAAATGTTGACTTGTCAACTTCAAGAGCTAGAAATTCCAAATCAGAGTGTTTGTAACTTGCCTGAACCAGTTGCTGTTGAGAATCCAATTGGGATTGATCCCAATCTTGGTTTGGGATTTGATTTTGCTCGGTTTAACATTGATGATTTTGGACCAGATTTTGAAGAATTTGGCGACTTAGGTGACTTCGCGGATATTCAAGTTCATGGTTTTGATGACAATGAACCTAGTGAGCTTCCTGATTTTGATTTTGGTGATATTGGTGATGATGATGAATTTGCTGGTTGGATTGAAGAGCCCTTCCAACACAACATATGTTATCTCTAA 1089 0.3875 MRGSRKSRARPRPNPLKQSRLITRKLQVVFNDPEATDSSEDESQHARTLTKISFVEVTLPPHVSTVYLASQNSFFEKSNTVTRRKACLSTQRQTKKKVLPTISSPKKKRQSSSKYRGVRLRPWGKWAAEIRNPYTNVRIWLGTFDTVEDASQACESKRLQFKLDHEKNIAKICFNKSSSAIPPVATLNKNSSVDADVANALVSGKCSTAKDYESLFSQISPSSVLELDTLASNPIEKVDVPSNNEVAVVVDEVSEMLTCQLQELEIPNQSVCNLPEPVAVENPIGIDPNLGLGFDFARFNIDDFGPDFEEFGDLGDFADIQVHGFDDNEPSELPDFDFGDIGDDDEFAGWIEEPFQHNICYL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04738 362 Gene3D AP2/ERF domain 113 175 IPR036955 GO:0003700|GO:0006355
Mepo4g04738 362 CDD AP2 113 153 IPR001471 GO:0003700|GO:0006355
Mepo4g04738 362 SMART rav1_2 114 168 IPR001471 GO:0003700|GO:0006355
Mepo4g04738 362 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mepo4g04738 362 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mepo4g04738 362 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Mepo4g04738 362 MobiDBLite consensus disorder prediction 85 114 - -
Mepo4g04738 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 229 - -
Mepo4g04738 362 MobiDBLite consensus disorder prediction 85 108 - -
Mepo4g04738 362 Pfam AP2 domain 113 158 IPR001471 GO:0003700|GO:0006355
Mepo4g04738 362 ProSiteProfiles AP2/ERF domain profile. 114 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04738 Mepo-Chr4 56856323 56857411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04738 16 343 AP2-EREBP Transcription Factor Family AT1G68550 30.312 9.58e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mepo4g04738 AP2 1.1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04738 4 56856323 56857411 Mepo4g04738 4 56856323 56857411 ECH