Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04679 ATGGACTCAAATTCATCTAGCTTTCTTTTGAACTCTTCAAATTTTCACTCAGTTTTCTATCAGGACAAACATGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAACTGTTCAACATGATGCTTATCATTCTTCTACTAACTTGTATGATGATGATCTTATGGATTGGCCTAATATGAAGAATTCAAGCACAACACATTCTAGATCTGTCCGTGAAAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTCTCCATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATACTCAAGTCTAGCCATTCAATTAGAAGACATGTTTGGTAGCCAATCACTATCTGGTATAAGATTATTTCAATCTGGATCAGAGTATTCATTATTCTACAAGGACAGTGAAGACAATTGGAGGACTGTTGGTGATGTCCTGTGGAAGGAGTTTGTAGAATGTGTGAAAAGGCTAAGGATTGCAAGAAAGAATGCAGGCTATGTTAACATTTCATCTTAG 552 0.375 MDSNSSSFLLNSSNFHSVFYQDKHDDGIIDLGLSLGTVQHDAYHSSTNLYDDDLMDWPNMKNSSTTHSRSVRENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSQSLSGIRLFQSGSEYSLFYKDSEDNWRTVGDVLWKEFVECVKRLRIARKNAGYVNISS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04679 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 175 IPR003311 GO:0005634|GO:0006355
Mepo4g04679 183 Pfam AUX/IAA family 61 174 IPR033389 -
Mepo4g04679 183 SUPERFAMILY CAD & PB1 domains 88 171 - -
Mepo4g04679 183 Gene3D - 82 181 - -
Mepo4g04679 183 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04679 Mepo-Chr4 56295024 56296647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04679 89 171 B3 DNA Binding Superfamily AT1G19850 38.554 1.69e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Mepo4g04679 AUX_IAA 5.6e-21 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04679 4 56295024 56296647 Mepo4g04679 4 56295024 56296647 ECH