Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04670 ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAAGCGGTTACGGCATCGGCGTCAACACCGCCGGTCACATGCAGTCGAACGCCGGCGTGTTTGCTTCGTTGTACTCTGCTCTGAGTAATGATCTTCCATCATCGCTCGCCGGAAACAGCAGCAACGGCGGTGGATTTTCGCTTTATCCTTACTCTGACCTTGGAACAGAGTACGACTCATGCGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTTTCTCAGTCGTCTCCTGGAAAGTTCCAAAGAGGTTGAAGCTCTGCAGCAGGAAAACGGACAGCTCCGTGCCGTGAACAAAGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAAGCTTCGCTGGAGAACCGATTCAATGGTGGCGGATCCTCCGTCCAGACTCAATCAACTCCGTTTGATGTGTTGCAAGGTTTCCGTGGCTTGAATCTTGGAGATGGAAAGGAAAACTGTGCTGATTGGAATAGCAATAACATCAATAATAATAACAAGGAGTTGCAGGAAGCTTCCGAATCTGACGAGAGTCCGACGAGTGTGATTGAGAATAACGGTGTTGAAACGGAGAGGTTCTCGCTTCCAAAGAGCATTTCTGTTAGATCCAATGGCTACTTGAAGCTGGCTCCGCCTCCGGCCGTCGTAACTAACAACAATGCTTGCCGCACCAAAGGCGCTACTCGCTCCCGCGCTTCCTCCACTCAATCTGATACAGTTCAAAAGGTATTTGTGCGAGGAGGGCAGAAAGAAGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTCTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTCAATTCGCTCATGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATGTCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATGA 1074 0.4963 MHNKDVCSPSSKSGYGIGVNTAGHMQSNAGVFASLYSALSNDLPSSLAGNSSNGGGFSLYPYSDLGTEYDSCVIQKHQDMVNRHSMFLSRLLESSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFNGGGSSVQTQSTPFDVLQGFRGLNLGDGKENCADWNSNNINNNNKELQEASESDESPTSVIENNGVETERFSLPKSISVRSNGYLKLAPPPAVVTNNNACRTKGATRSRASSTQSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQPKPRSMKLER 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04670 357 Gene3D - 268 306 - -
Mepo4g04670 357 Gene3D - 307 343 - -
Mepo4g04670 357 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Mepo4g04670 357 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 347 IPR045877 GO:0003729
Mepo4g04670 357 FunFam Zinc finger protein 36, C3H1 type-like 1 307 343 - -
Mepo4g04670 357 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Mepo4g04670 357 Coils Coil 91 118 - -
Mepo4g04670 357 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Mepo4g04670 357 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Mepo4g04670 357 MobiDBLite consensus disorder prediction 227 247 - -
Mepo4g04670 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872
Mepo4g04670 357 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872
Mepo4g04670 357 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872
Mepo4g04670 357 FunFam zinc finger CCCH domain-containing protein 15-like 267 306 - -
Mepo4g04670 357 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04670 Mepo-Chr4 56188640 56192685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04670 62 352 C3H Transcription Factor Family AT1G68200 49.153 3.25e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g04670 zf-CCCH 2.9e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04670 4 56188640 56192685 Mepo4g04670 4 56188640 56192685 ECH