Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04615 ATGACCATGACCATGACACTCTCACGATCATTCAGAAGATTGCCCACTCTTCTTCAACTCTCTAAATCAACTTCACATTTTGAATCACCCACCGTTCAATTCCACATTTGCCCATTTCACACATCACTTCTTCATAAACCCAACAACCCTCATGCCGAAACTATCTGCAGAATCCTATCCACCGCACCTGATTCACCCGTCGACTTCTCTCTCCGCAACTTTCCGGTTGAAGTCTCACCGGATCTCGTCTTTGATGTCTTGAACAAGCTCAGCAATGCTGGCATTCTCGCTCTTTCGTTCTTCCGTTGGGCCGAGAAACAAATAGGATTCAAACACAACACAGATATTTTCCATGCTTTGATTGAAGCATTGGGTAAAATCAAACAGTTCAAGATGATCTGGAATTTGGTTGATGAAATGAAACAACGAAAGCTGTTGAATGCTGACACTTTTGCCCTCATTGCTCGTCGTTATGTAAGAGCCAAAGTTATCAAGGAAGCGTTGAAGACGTTTGAGAGGATGGAAAAATATGGATTGAAGCCTCAAATTTCGGATTTCAACAAGTTAATTGATGTTTTATGTAAGTCAAAGTTTCATGTTGAGAAAGCACAAGAACTGTTTGATAAAATGCGGCAATGGAATTTAGAGCCTAATCTTAAATCCTATACTATTTTAATAGAAGGTTGGAGTCAACAGCAAAATTTGTTGAAGGTTGATGAGGTTTGTAGGGAGATGAAGGATGATGGTTTTGAGCCTGATGTGGTTACATATGGTATAATCATCAATGCTTATTGTAAGGCTAAAAAATATGATGAGGCTATTGGTATTTATCATGAGATGCTATCAAAGAGTGTAAATCCTAGTCCTCATATATATTGTACTTTGATTAGTGGTCTTGGTAATGGTGGTAGAATGAATGAAGCTCTGGAATTCTTTGAAAAATCTAAGGCTAGTGGGTTTCCGCCTGAAGCACCTACTTATAATGCTGTTGTAGGTGCTTACTGCTGGTCAATGTTGATCGATGATGCTTACAGGATTATCGGTGAGATGAAAGAACTTGGGATTGGTCCGAATTCTCGAACGTATGATATAATACTTGTTCACTTGATAAAGGGTGGAAGAACCAAAGAAGCTTACTCGGTTTTCCAAAGAATGAGTAGTGAGACGGGGTGTGAGCCGAGTGTAAGCACATATGCGATCATGGTGAGGATGTTTTGTAATGAAAACCAATTGGATATGGCAATGGTAGTTTGGGATCAGATGAAAGACAAGGGAATCCTTCCAGGAATTCACATGTTCTCGACGTTGATAATTTCCTTGTGTCATGAAAATAAGTTGGATGATGCATGTAAATACTTTCAACAAATGTTGGACATTGGCATTCGGCCTACTGCTAATATGTTCAGTGCCTTCAAGAGAGCTCTAATGGCTGCGGGAATGGAGAATACTGTGATACACTTTGCAAAGAAAGTTGATAAACTGAGGAATACTCCATTAATTGCTTGA 1506 0.3958 MTMTMTLSRSFRRLPTLLQLSKSTSHFESPTVQFHICPFHTSLLHKPNNPHAETICRILSTAPDSPVDFSLRNFPVEVSPDLVFDVLNKLSNAGILALSFFRWAEKQIGFKHNTDIFHALIEALGKIKQFKMIWNLVDEMKQRKLLNADTFALIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFEPDVVTYGIIINAYCKAKKYDEAIGIYHEMLSKSVNPSPHIYCTLISGLGNGGRMNEALEFFEKSKASGFPPEAPTYNAVVGAYCWSMLIDDAYRIIGEMKELGIGPNSRTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWDQMKDKGILPGIHMFSTLIISLCHENKLDDACKYFQQMLDIGIRPTANMFSAFKRALMAAGMENTVIHFAKKVDKLRNTPLIA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Mepo4g04615 501 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 260 490 - -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Mepo4g04615 501 Gene3D Tetratricopeptide repeat domain 77 198 IPR011990 GO:0005515
Mepo4g04615 501 Gene3D Tetratricopeptide repeat domain 367 494 IPR011990 GO:0005515
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 393 IPR002885 -
Mepo4g04615 501 Pfam Pentacotripeptide-repeat region of PRORP 375 490 IPR033443 -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Mepo4g04615 501 Pfam PPR repeat family 252 299 IPR002885 -
Mepo4g04615 501 Pfam PPR repeat family 326 366 IPR002885 -
Mepo4g04615 501 Pfam PPR repeat family 186 228 IPR002885 -
Mepo4g04615 501 SUPERFAMILY TPR-like 253 459 IPR011990 GO:0005515
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Mepo4g04615 501 Gene3D Tetratricopeptide repeat domain 199 366 IPR011990 GO:0005515
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 397 429 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 150 181 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 326 358 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 221 254 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 255 288 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 432 464 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 291 322 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 186 218 IPR002885 -
Mepo4g04615 501 NCBIfam pentatricopeptide repeat 361 395 IPR002885 -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Mepo4g04615 501 Pfam PPR repeat 117 144 IPR002885 -
Mepo4g04615 501 Pfam PPR repeat 157 179 IPR002885 -
Mepo4g04615 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 217 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04615 Mepo-Chr4 55715297 55717900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04615 96 501 Miscellaneous Gene Families AT4G11690 24.877 1.64e-41 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04615 4 55715297 55717900 Mepo4g04615 4 55715297 55717900 ECH